miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28791 3' -60.5 NC_006146.1 + 103366 0.66 0.798594
Target:  5'- cUCUCGGAuaacGAGcGugGGGGAgauaggGCGccUGCCa -3'
miRNA:   3'- -AGGGCCU----CUC-CugCCCCU------UGC--ACGGg -5'
28791 3' -60.5 NC_006146.1 + 114759 0.66 0.798594
Target:  5'- gCCgCGGGGAGGGCucucggucucGGGGcccGCG-GCCa -3'
miRNA:   3'- aGG-GCCUCUCCUG----------CCCCu--UGCaCGGg -5'
28791 3' -60.5 NC_006146.1 + 133821 0.66 0.798594
Target:  5'- gCUCaGGGGAGGGgGuGaGGAugGUggGCCCa -3'
miRNA:   3'- aGGG-CCUCUCCUgC-C-CCUugCA--CGGG- -5'
28791 3' -60.5 NC_006146.1 + 68724 0.66 0.798594
Target:  5'- gUCCCcGAGAGcugucGCGGGGugGugGagGCCCa -3'
miRNA:   3'- -AGGGcCUCUCc----UGCCCC--UugCa-CGGG- -5'
28791 3' -60.5 NC_006146.1 + 38165 0.66 0.795173
Target:  5'- cCCCGGAGAaccgGGGCuacuGGGGAccacCGggcaucgugaaggGCCCa -3'
miRNA:   3'- aGGGCCUCU----CCUG----CCCCUu---GCa------------CGGG- -5'
28791 3' -60.5 NC_006146.1 + 48630 0.66 0.790002
Target:  5'- -gCCGu-GGGGGCGGGcuccGGGCGggUGCCCa -3'
miRNA:   3'- agGGCcuCUCCUGCCC----CUUGC--ACGGG- -5'
28791 3' -60.5 NC_006146.1 + 61948 0.66 0.790002
Target:  5'- gCCCGGuGAucaaggcucaGGAcaCGGGGGcCGUugagGCCCa -3'
miRNA:   3'- aGGGCCuCU----------CCU--GCCCCUuGCA----CGGG- -5'
28791 3' -60.5 NC_006146.1 + 53426 0.66 0.790002
Target:  5'- cUCUCGGccgAGAGGAUccgaaaGGGcGGugGUGUCUg -3'
miRNA:   3'- -AGGGCC---UCUCCUG------CCC-CUugCACGGG- -5'
28791 3' -60.5 NC_006146.1 + 169480 0.66 0.790002
Target:  5'- cCUCGGGGGcGGAgGGGGGG-GU-CCCg -3'
miRNA:   3'- aGGGCCUCU-CCUgCCCCUUgCAcGGG- -5'
28791 3' -60.5 NC_006146.1 + 6719 0.66 0.790002
Target:  5'- gUCCCGGGugguGAaGACGGGGucugGUGCUg -3'
miRNA:   3'- -AGGGCCU----CUcCUGCCCCuug-CACGGg -5'
28791 3' -60.5 NC_006146.1 + 170411 0.66 0.790002
Target:  5'- cCUCGGGGGcGGAgGGGGGG-GU-CCCg -3'
miRNA:   3'- aGGGCCUCU-CCUgCCCCUUgCAcGGG- -5'
28791 3' -60.5 NC_006146.1 + 146514 0.66 0.790002
Target:  5'- aCCCGGAGAGcGAaGGcgccgcgcccuGGAGCuG-GCCCu -3'
miRNA:   3'- aGGGCCUCUC-CUgCC-----------CCUUG-CaCGGG- -5'
28791 3' -60.5 NC_006146.1 + 51561 0.66 0.790002
Target:  5'- -aCUGGAGAuGGGUGGGGAgGCGgcgcgGCCg -3'
miRNA:   3'- agGGCCUCU-CCUGCCCCU-UGCa----CGGg -5'
28791 3' -60.5 NC_006146.1 + 168548 0.66 0.790002
Target:  5'- cCUCGGGGGcGGAgGGGGGG-GU-CCCg -3'
miRNA:   3'- aGGGCCUCU-CCUgCCCCUUgCAcGGG- -5'
28791 3' -60.5 NC_006146.1 + 50815 0.66 0.790002
Target:  5'- gUCCCaGGGGGGGAUccuuGGGGGcucCGUcuuCCCg -3'
miRNA:   3'- -AGGG-CCUCUCCUG----CCCCUu--GCAc--GGG- -5'
28791 3' -60.5 NC_006146.1 + 137387 0.66 0.790002
Target:  5'- aCCUagGGAGGGaGGCcGGGAGgGUGCUg -3'
miRNA:   3'- aGGG--CCUCUC-CUGcCCCUUgCACGGg -5'
28791 3' -60.5 NC_006146.1 + 70704 0.66 0.789136
Target:  5'- -gCUGGgaacgggagcucaGGAGGAgCGGGGGGCuuauUGCCCc -3'
miRNA:   3'- agGGCC-------------UCUCCU-GCCCCUUGc---ACGGG- -5'
28791 3' -60.5 NC_006146.1 + 122601 0.66 0.788268
Target:  5'- cUCCgaCGGuGGAGGGCGaGGGGCGgaggaggccgggGCCCu -3'
miRNA:   3'- -AGG--GCC-UCUCCUGCcCCUUGCa-----------CGGG- -5'
28791 3' -60.5 NC_006146.1 + 39253 0.66 0.781282
Target:  5'- uUCUCGGcccuGAGGaACGGGuGugG-GCCCc -3'
miRNA:   3'- -AGGGCCu---CUCC-UGCCCcUugCaCGGG- -5'
28791 3' -60.5 NC_006146.1 + 115666 0.66 0.781282
Target:  5'- gCCCGGGcgacguaccuGAGGGCGGaGGcagaGGCG-GCCg -3'
miRNA:   3'- aGGGCCU----------CUCCUGCC-CC----UUGCaCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.