miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28791 3' -60.5 NC_006146.1 + 114759 0.66 0.798594
Target:  5'- gCCgCGGGGAGGGCucucggucucGGGGcccGCG-GCCa -3'
miRNA:   3'- aGG-GCCUCUCCUG----------CCCCu--UGCaCGGg -5'
28791 3' -60.5 NC_006146.1 + 167321 0.66 0.763489
Target:  5'- cUUCCGugucuGAGuGGACGGGGGAUuucauuucGCCCu -3'
miRNA:   3'- -AGGGC-----CUCuCCUGCCCCUUGca------CGGG- -5'
28791 3' -60.5 NC_006146.1 + 77305 0.66 0.763489
Target:  5'- cCCCaGGAGcccGGCGGGucGCGcaUGCCCa -3'
miRNA:   3'- aGGG-CCUCuc-CUGCCCcuUGC--ACGGG- -5'
28791 3' -60.5 NC_006146.1 + 132459 0.66 0.763489
Target:  5'- cCCCGGAGGca--GGGGAuguGUGCCa -3'
miRNA:   3'- aGGGCCUCUccugCCCCUug-CACGGg -5'
28791 3' -60.5 NC_006146.1 + 101290 0.66 0.75443
Target:  5'- cCCCGGGGAcGugGGccuGGACGUcucgcuGCCCc -3'
miRNA:   3'- aGGGCCUCUcCugCCc--CUUGCA------CGGG- -5'
28791 3' -60.5 NC_006146.1 + 136993 0.66 0.762588
Target:  5'- -aCCGGAGgagcuccAGGACGGGGGuaG-GCCg -3'
miRNA:   3'- agGGCCUC-------UCCUGCCCCUugCaCGGg -5'
28791 3' -60.5 NC_006146.1 + 66669 0.66 0.75443
Target:  5'- aUCCUGaGGGGGGCGGGGcACcu-CCCu -3'
miRNA:   3'- -AGGGCcUCUCCUGCCCCuUGcacGGG- -5'
28791 3' -60.5 NC_006146.1 + 31689 0.66 0.75443
Target:  5'- aCCagGGAaGGGugGGGGAccGCGgcUGCCa -3'
miRNA:   3'- aGGg-CCUcUCCugCCCCU--UGC--ACGGg -5'
28791 3' -60.5 NC_006146.1 + 128735 0.66 0.763489
Target:  5'- gUCUCGG-GAGGG-GGGuGAGucCGUGCCa -3'
miRNA:   3'- -AGGGCCuCUCCUgCCC-CUU--GCACGGg -5'
28791 3' -60.5 NC_006146.1 + 70535 0.66 0.771552
Target:  5'- aCCCaGGucGGAGGGCGGuggugggguauauGGGuugugggcauCGUGCCCg -3'
miRNA:   3'- aGGG-CC--UCUCCUGCC-------------CCUu---------GCACGGG- -5'
28791 3' -60.5 NC_006146.1 + 168491 0.66 0.772442
Target:  5'- gUCCaCGGucGGGGGGcCGGGGAccaACagaGCCCu -3'
miRNA:   3'- -AGG-GCC--UCUCCU-GCCCCU---UGca-CGGG- -5'
28791 3' -60.5 NC_006146.1 + 162364 0.66 0.772442
Target:  5'- cUCCCcagauaguacagGGuGcAGGACGGGGGcuuUGCCCu -3'
miRNA:   3'- -AGGG------------CCuC-UCCUGCCCCUugcACGGG- -5'
28791 3' -60.5 NC_006146.1 + 103366 0.66 0.798594
Target:  5'- cUCUCGGAuaacGAGcGugGGGGAgauaggGCGccUGCCa -3'
miRNA:   3'- -AGGGCCU----CUC-CugCCCCU------UGC--ACGGg -5'
28791 3' -60.5 NC_006146.1 + 38165 0.66 0.795173
Target:  5'- cCCCGGAGAaccgGGGCuacuGGGGAccacCGggcaucgugaaggGCCCa -3'
miRNA:   3'- aGGGCCUCU----CCUG----CCCCUu---GCa------------CGGG- -5'
28791 3' -60.5 NC_006146.1 + 137387 0.66 0.790002
Target:  5'- aCCUagGGAGGGaGGCcGGGAGgGUGCUg -3'
miRNA:   3'- aGGG--CCUCUC-CUGcCCCUUgCACGGg -5'
28791 3' -60.5 NC_006146.1 + 50815 0.66 0.790002
Target:  5'- gUCCCaGGGGGGGAUccuuGGGGGcucCGUcuuCCCg -3'
miRNA:   3'- -AGGG-CCUCUCCUG----CCCCUu--GCAc--GGG- -5'
28791 3' -60.5 NC_006146.1 + 70704 0.66 0.789136
Target:  5'- -gCUGGgaacgggagcucaGGAGGAgCGGGGGGCuuauUGCCCc -3'
miRNA:   3'- agGGCC-------------UCUCCU-GCCCCUUGc---ACGGG- -5'
28791 3' -60.5 NC_006146.1 + 122601 0.66 0.788268
Target:  5'- cUCCgaCGGuGGAGGGCGaGGGGCGgaggaggccgggGCCCu -3'
miRNA:   3'- -AGG--GCC-UCUCCUGCcCCUUGCa-----------CGGG- -5'
28791 3' -60.5 NC_006146.1 + 73546 0.66 0.781282
Target:  5'- cUCCGGAGcuccccGGGCGGGuGGuUGUGgCCg -3'
miRNA:   3'- aGGGCCUCu-----CCUGCCC-CUuGCACgGG- -5'
28791 3' -60.5 NC_006146.1 + 115666 0.66 0.781282
Target:  5'- gCCCGGGcgacguaccuGAGGGCGGaGGcagaGGCG-GCCg -3'
miRNA:   3'- aGGGCCU----------CUCCUGCC-CC----UUGCaCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.