miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 123358 0.66 0.926291
Target:  5'- cCGAgGGAGCUCuGGCGcuGGC-CG-GGGGCc -3'
miRNA:   3'- -GCU-CCUCGAG-UUGC--UCGcGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 123034 0.66 0.903395
Target:  5'- cCGAGGcGGCcCAGgucCGGGCGC-UGGAGg -3'
miRNA:   3'- -GCUCC-UCGaGUU---GCUCGCGcACCUCg -5'
28792 5' -56.5 NC_006146.1 + 122174 0.66 0.925764
Target:  5'- aGaAGGAGCUgCugcGCGAGCgggaggccagagaGCGgacGGAGCg -3'
miRNA:   3'- gC-UCCUCGA-Gu--UGCUCG-------------CGCa--CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 120511 0.68 0.814116
Target:  5'- cCGAGGAc----GCGAGcCGCGUGGAuGCg -3'
miRNA:   3'- -GCUCCUcgaguUGCUC-GCGCACCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 118338 0.7 0.750715
Target:  5'- uGAGG-GC-CGGCGGGCGCGUGa--- -3'
miRNA:   3'- gCUCCuCGaGUUGCUCGCGCACcucg -5'
28792 5' -56.5 NC_006146.1 + 118019 0.69 0.777751
Target:  5'- --cGGGGCUCGGgGcGCGCGaggaccacggaccUGGAGCc -3'
miRNA:   3'- gcuCCUCGAGUUgCuCGCGC-------------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 116982 1.12 0.001943
Target:  5'- uCGAGGAGCUCAACGAGCGCGUGGAGCg -3'
miRNA:   3'- -GCUCCUCGAGUUGCUCGCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 115010 0.75 0.439212
Target:  5'- cCGuGGAGCUgGugGAGCG-G-GGAGCa -3'
miRNA:   3'- -GCuCCUCGAgUugCUCGCgCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 112591 0.69 0.786838
Target:  5'- gGuGGAGUUCuccaccccggcgaAGCGcaugaAGgGCGUGGAGCa -3'
miRNA:   3'- gCuCCUCGAG-------------UUGC-----UCgCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 103586 0.68 0.830913
Target:  5'- uGGGccGGGCUCAGCGcGGaCGUGgcccgGGAGCu -3'
miRNA:   3'- gCUC--CUCGAGUUGC-UC-GCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 102828 0.68 0.814116
Target:  5'- -cGGGGGCUCuGCGcuugcucGCGCcgcucGUGGAGCu -3'
miRNA:   3'- gcUCCUCGAGuUGCu------CGCG-----CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 101811 0.69 0.769464
Target:  5'- aCGAGaGGGCUCGACGAcgaguucgGCGgGgcccGAGCg -3'
miRNA:   3'- -GCUC-CUCGAGUUGCU--------CGCgCac--CUCG- -5'
28792 5' -56.5 NC_006146.1 + 101064 0.66 0.915303
Target:  5'- cCGAGG-GC-C-ACGGGCucauGCuGUGGGGCa -3'
miRNA:   3'- -GCUCCuCGaGuUGCUCG----CG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 100264 0.69 0.769464
Target:  5'- -cGGGGGCUcCAugGAGCcuccuaGCG-GGGGCu -3'
miRNA:   3'- gcUCCUCGA-GUugCUCG------CGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 90089 0.7 0.712074
Target:  5'- gGGGGAGCaguggaggCAGCgGAGCaggagGCaGUGGAGCa -3'
miRNA:   3'- gCUCCUCGa-------GUUG-CUCG-----CG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 90025 0.68 0.830913
Target:  5'- aGAGGuGCagGGgGaAGCG-GUGGAGCa -3'
miRNA:   3'- gCUCCuCGagUUgC-UCGCgCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 89803 0.73 0.542372
Target:  5'- aCGAGGAcgagGCagaGGCGGGgGCGUGGAGg -3'
miRNA:   3'- -GCUCCU----CGag-UUGCUCgCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 84860 0.68 0.814116
Target:  5'- gGAGGAGC-CGACGgagacAGCGgcuccaGUGGcAGCg -3'
miRNA:   3'- gCUCCUCGaGUUGC-----UCGCg-----CACC-UCG- -5'
28792 5' -56.5 NC_006146.1 + 84628 0.68 0.84701
Target:  5'- aGAGGAGCUacgUGAGCGcCGUGcuGCc -3'
miRNA:   3'- gCUCCUCGAguuGCUCGC-GCACcuCG- -5'
28792 5' -56.5 NC_006146.1 + 75280 0.68 0.839053
Target:  5'- cCGAGGAGC-CGA-GAGCGUccgGGAcGCu -3'
miRNA:   3'- -GCUCCUCGaGUUgCUCGCGca-CCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.