Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 73549 | 0.7 | 0.712074 |
Target: 5'- --cGGAGCUCccCGGGCGgGUGGuuguGGCc -3' miRNA: 3'- gcuCCUCGAGuuGCUCGCgCACC----UCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 72519 | 0.68 | 0.830913 |
Target: 5'- gGAGGAGCg-GACG-GCuGCGgcucucggGGAGCc -3' miRNA: 3'- gCUCCUCGagUUGCuCG-CGCa-------CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 70712 | 0.7 | 0.731561 |
Target: 5'- -cGGGAGCUCAG-GAGgaGCGgGGGGCu -3' miRNA: 3'- gcUCCUCGAGUUgCUCg-CGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 69968 | 0.68 | 0.839053 |
Target: 5'- aGAGGAGCUUgucauucuggaaGGCGuAGCguauGCGUGGAcugGCc -3' miRNA: 3'- gCUCCUCGAG------------UUGC-UCG----CGCACCU---CG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 68057 | 0.67 | 0.862352 |
Target: 5'- uGAGcAGCUCcACGAGCgGCGc-GAGCa -3' miRNA: 3'- gCUCcUCGAGuUGCUCG-CGCacCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 65473 | 0.68 | 0.821758 |
Target: 5'- uGGcGGGCUguGCGGGUgcugagcuggccgGCGUGGGGCu -3' miRNA: 3'- gCUcCUCGAguUGCUCG-------------CGCACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 65052 | 0.72 | 0.609018 |
Target: 5'- gCGAGGAGCggcacugcgucuacUCGGCG-GCGCGgggcaggaGGGGCc -3' miRNA: 3'- -GCUCCUCG--------------AGUUGCuCGCGCa-------CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 61824 | 0.68 | 0.830913 |
Target: 5'- aGGGGcGCUgGugGGG-GCaGUGGGGCu -3' miRNA: 3'- gCUCCuCGAgUugCUCgCG-CACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 61586 | 0.66 | 0.914729 |
Target: 5'- uGAGGAagagccgGCUgCAGCGGcCGCGgccGGGGCc -3' miRNA: 3'- gCUCCU-------CGA-GUUGCUcGCGCa--CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 57972 | 0.66 | 0.923092 |
Target: 5'- aCGAGGAGUUCuuccaggcgcaccagGACGAGC---UGGAGg -3' miRNA: 3'- -GCUCCUCGAG---------------UUGCUCGcgcACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 56835 | 0.67 | 0.883844 |
Target: 5'- cCGAGGcGGCcucuggCGGCGGGgGCGgcagcuuuggcUGGGGCu -3' miRNA: 3'- -GCUCC-UCGa-----GUUGCUCgCGC-----------ACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 54899 | 0.67 | 0.862352 |
Target: 5'- gGAGGAGCUCuuuGCuGAGUacCG-GGAGUg -3' miRNA: 3'- gCUCCUCGAGu--UG-CUCGc-GCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 53952 | 0.7 | 0.730594 |
Target: 5'- aCGcAGGGGCUC-ACGGGCGUuuucccacaggggGUGGucuGCg -3' miRNA: 3'- -GC-UCCUCGAGuUGCUCGCG-------------CACCu--CG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 53789 | 0.67 | 0.8668 |
Target: 5'- aCGAGGGcCUCGGCccGCGCGgcguccauagcggGGGGCu -3' miRNA: 3'- -GCUCCUcGAGUUGcuCGCGCa------------CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 53331 | 0.66 | 0.920913 |
Target: 5'- cCGAGGAgGCcCGGCG-GC-CGcGGGGCg -3' miRNA: 3'- -GCUCCU-CGaGUUGCuCGcGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 51680 | 0.68 | 0.822598 |
Target: 5'- aGGGGGGC--GACGGG-GCG-GGGGCu -3' miRNA: 3'- gCUCCUCGagUUGCUCgCGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 51185 | 0.66 | 0.920913 |
Target: 5'- -aAGGGGgUCuGCGGGCugGCGUGGuacagGGCa -3' miRNA: 3'- gcUCCUCgAGuUGCUCG--CGCACC-----UCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 51184 | 0.72 | 0.612035 |
Target: 5'- cCGGGGAggcuGCUCGAgGaAGC-UGUGGAGCa -3' miRNA: 3'- -GCUCCU----CGAGUUgC-UCGcGCACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 48942 | 0.66 | 0.926291 |
Target: 5'- uCGGGGAccaGcCUCAGgGAGuUGUG-GGAGCg -3' miRNA: 3'- -GCUCCU---C-GAGUUgCUC-GCGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 46881 | 0.68 | 0.825945 |
Target: 5'- uGAGGGGCUCcuggguguccGACGAGCGUaggccggguugagGGGGUc -3' miRNA: 3'- gCUCCUCGAG----------UUGCUCGCGca-----------CCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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