miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 148445 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 151523 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 154601 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 84628 0.68 0.84701
Target:  5'- aGAGGAGCUacgUGAGCGcCGUGcuGCc -3'
miRNA:   3'- gCUCCUCGAguuGCUCGC-GCACcuCG- -5'
28792 5' -56.5 NC_006146.1 + 75280 0.68 0.839053
Target:  5'- cCGAGGAGC-CGA-GAGCGUccgGGAcGCu -3'
miRNA:   3'- -GCUCCUCGaGUUgCUCGCGca-CCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 72519 0.68 0.830913
Target:  5'- gGAGGAGCg-GACG-GCuGCGgcucucggGGAGCc -3'
miRNA:   3'- gCUCCUCGagUUGCuCG-CGCa-------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 115010 0.75 0.439212
Target:  5'- cCGuGGAGCUgGugGAGCG-G-GGAGCa -3'
miRNA:   3'- -GCuCCUCGAgUugCUCGCgCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 18245 0.75 0.475526
Target:  5'- gGGGGAGCUCAugGAcaGCcUGgGGAGCg -3'
miRNA:   3'- gCUCCUCGAGUugCU--CGcGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 65052 0.72 0.609018
Target:  5'- gCGAGGAGCggcacugcgucuacUCGGCG-GCGCGgggcaggaGGGGCc -3'
miRNA:   3'- -GCUCCUCG--------------AGUUGCuCGCGCa-------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 73549 0.7 0.712074
Target:  5'- --cGGAGCUCccCGGGCGgGUGGuuguGGCc -3'
miRNA:   3'- gcuCCUCGAGuuGCUCGCgCACC----UCG- -5'
28792 5' -56.5 NC_006146.1 + 37675 0.7 0.731561
Target:  5'- aGGGGGGCUgggggCAACGAG-GCaaGGAGCc -3'
miRNA:   3'- gCUCCUCGA-----GUUGCUCgCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 70712 0.7 0.731561
Target:  5'- -cGGGAGCUCAG-GAGgaGCGgGGGGCu -3'
miRNA:   3'- gcUCCUCGAGUUgCUCg-CGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 165352 0.7 0.738307
Target:  5'- cCGAGGGauuucguggauaauGCUCAGCGuGGCGCcaGGGGUc -3'
miRNA:   3'- -GCUCCU--------------CGAGUUGC-UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 18600 0.7 0.748816
Target:  5'- aGAGcAGCUCAGCGGGCGaccaaaccuucgGUGGccAGCa -3'
miRNA:   3'- gCUCcUCGAGUUGCUCGCg-----------CACC--UCG- -5'
28792 5' -56.5 NC_006146.1 + 118338 0.7 0.750715
Target:  5'- uGAGG-GC-CGGCGGGCGCGUGa--- -3'
miRNA:   3'- gCUCCuCGaGUUGCUCGCGCACcucg -5'
28792 5' -56.5 NC_006146.1 + 101811 0.69 0.769464
Target:  5'- aCGAGaGGGCUCGACGAcgaguucgGCGgGgcccGAGCg -3'
miRNA:   3'- -GCUC-CUCGAGUUGCU--------CGCgCac--CUCG- -5'
28792 5' -56.5 NC_006146.1 + 118019 0.69 0.777751
Target:  5'- --cGGGGCUCGGgGcGCGCGaggaccacggaccUGGAGCc -3'
miRNA:   3'- gcuCCUCGAGUUgCuCGCGC-------------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 120511 0.68 0.814116
Target:  5'- cCGAGGAc----GCGAGcCGCGUGGAuGCg -3'
miRNA:   3'- -GCUCCUcgaguUGCUC-GCGCACCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 103586 0.68 0.830913
Target:  5'- uGGGccGGGCUCAGCGcGGaCGUGgcccgGGAGCu -3'
miRNA:   3'- gCUC--CUCGAGUUGC-UC-GCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 61824 0.68 0.830913
Target:  5'- aGGGGcGCUgGugGGG-GCaGUGGGGCu -3'
miRNA:   3'- gCUCCuCGAgUugCUCgCG-CACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.