Results 41 - 60 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 124605 | 0.66 | 0.897101 |
Target: 5'- aGAGGGGCUCGAgcuCGAcCGCcgccaccGGGGCu -3' miRNA: 3'- gCUCCUCGAGUU---GCUcGCGca-----CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 137183 | 0.66 | 0.903395 |
Target: 5'- gGAGGAGCUCcagAACGGGgGUaGgccGGGCa -3' miRNA: 3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 123034 | 0.66 | 0.903395 |
Target: 5'- cCGAGGcGGCcCAGgucCGGGCGC-UGGAGg -3' miRNA: 3'- -GCUCC-UCGaGUU---GCUCGCGcACCUCg -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 139523 | 0.66 | 0.903395 |
Target: 5'- gGAGGAGgUCuguAUGGGgGCcaagGGGGCu -3' miRNA: 3'- gCUCCUCgAGu--UGCUCgCGca--CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 13945 | 0.66 | 0.913575 |
Target: 5'- gGGGGAGCccaggacaacuuuaUCAGCGAGC----GGAGCc -3' miRNA: 3'- gCUCCUCG--------------AGUUGCUCGcgcaCCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 61586 | 0.66 | 0.914729 |
Target: 5'- uGAGGAagagccgGCUgCAGCGGcCGCGgccGGGGCc -3' miRNA: 3'- gCUCCU-------CGA-GUUGCUcGCGCa--CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 101064 | 0.66 | 0.915303 |
Target: 5'- cCGAGG-GC-C-ACGGGCucauGCuGUGGGGCa -3' miRNA: 3'- -GCUCCuCGaGuUGCUCG----CG-CACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 148297 | 0.71 | 0.652305 |
Target: 5'- -cAGGAGCUcCAGCagGAGCGCG-GaGAGCc -3' miRNA: 3'- gcUCCUCGA-GUUG--CUCGCGCaC-CUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 129325 | 0.71 | 0.682371 |
Target: 5'- ---uGAGCUCGuccucGCGcAGCGCGcGGAGCg -3' miRNA: 3'- gcucCUCGAGU-----UGC-UCGCGCaCCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 90089 | 0.7 | 0.712074 |
Target: 5'- gGGGGAGCaguggaggCAGCgGAGCaggagGCaGUGGAGCa -3' miRNA: 3'- gCUCCUCGa-------GUUG-CUCG-----CG-CACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 53952 | 0.7 | 0.730594 |
Target: 5'- aCGcAGGGGCUC-ACGGGCGUuuucccacaggggGUGGucuGCg -3' miRNA: 3'- -GC-UCCUCGAGuUGCUCGCG-------------CACCu--CG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 34017 | 0.7 | 0.731561 |
Target: 5'- gGGGGGGgUCGgggcagGCGGGCGUGgucccGGGGCc -3' miRNA: 3'- gCUCCUCgAGU------UGCUCGCGCa----CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 137845 | 0.72 | 0.642241 |
Target: 5'- aGGGGGGCUCG--GGGUGgGUGG-GCg -3' miRNA: 3'- gCUCCUCGAGUugCUCGCgCACCuCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 51184 | 0.72 | 0.612035 |
Target: 5'- cCGGGGAggcuGCUCGAgGaAGC-UGUGGAGCa -3' miRNA: 3'- -GCUCCU----CGAGUUgC-UCGcGCACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 44367 | 0.72 | 0.612035 |
Target: 5'- aCGAGGuGC-CAgacccccgcccgGgGGGCGUGUGGGGCc -3' miRNA: 3'- -GCUCCuCGaGU------------UgCUCGCGCACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 169562 | 0.72 | 0.590957 |
Target: 5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3' miRNA: 3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 167697 | 0.72 | 0.590957 |
Target: 5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3' miRNA: 3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 168630 | 0.73 | 0.571994 |
Target: 5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucggUGGGGCc -3' miRNA: 3'- -GCUCCUCGAGuu--------GCUCGCGC------ACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 89803 | 0.73 | 0.542372 |
Target: 5'- aCGAGGAcgagGCagaGGCGGGgGCGUGGAGg -3' miRNA: 3'- -GCUCCU----CGag-UUGCUCgCGCACCUCg -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 128199 | 0.66 | 0.925764 |
Target: 5'- aGGGGGGCgccgCGgcgccgggccagACGcucuuucGGCGCGgGGAGCu -3' miRNA: 3'- gCUCCUCGa---GU------------UGC-------UCGCGCaCCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home