Results 81 - 93 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 90089 | 0.7 | 0.712074 |
Target: 5'- gGGGGAGCaguggaggCAGCgGAGCaggagGCaGUGGAGCa -3' miRNA: 3'- gCUCCUCGa-------GUUG-CUCG-----CG-CACCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 53952 | 0.7 | 0.730594 |
Target: 5'- aCGcAGGGGCUC-ACGGGCGUuuucccacaggggGUGGucuGCg -3' miRNA: 3'- -GC-UCCUCGAGuUGCUCGCG-------------CACCu--CG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 34017 | 0.7 | 0.731561 |
Target: 5'- gGGGGGGgUCGgggcagGCGGGCGUGgucccGGGGCc -3' miRNA: 3'- gCUCCUCgAGU------UGCUCGCGCa----CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 168319 | 0.68 | 0.814116 |
Target: 5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3' miRNA: 3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 167387 | 0.68 | 0.814116 |
Target: 5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3' miRNA: 3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 169722 | 0.69 | 0.805473 |
Target: 5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3' miRNA: 3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 168790 | 0.69 | 0.805473 |
Target: 5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3' miRNA: 3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 167858 | 0.69 | 0.805473 |
Target: 5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3' miRNA: 3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 153595 | 0.69 | 0.796679 |
Target: 5'- uGAcGGAgGC-CAACGAGCGCGgGGucagaGGCa -3' miRNA: 3'- gCU-CCU-CGaGUUGCUCGCGCaCC-----UCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 146164 | 0.69 | 0.769464 |
Target: 5'- gGAGGcuGCUUcugaauGACGAGCGCcUGGAcGCu -3' miRNA: 3'- gCUCCu-CGAG------UUGCUCGCGcACCU-CG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 100264 | 0.69 | 0.769464 |
Target: 5'- -cGGGGGCUcCAugGAGCcuccuaGCG-GGGGCu -3' miRNA: 3'- gcUCCUCGA-GUugCUCG------CGCaCCUCG- -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 127723 | 0.7 | 0.731561 |
Target: 5'- gCGAGGAGCUgAugGGGCugggccggagaGCcUGGAGa -3' miRNA: 3'- -GCUCCUCGAgUugCUCG-----------CGcACCUCg -5' |
|||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 41061 | 0.73 | 0.532607 |
Target: 5'- cCGAGGGcucGCUCgGACGGGgGCGUGGcgGGUg -3' miRNA: 3'- -GCUCCU---CGAG-UUGCUCgCGCACC--UCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home