miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28793 3' -55.7 NC_006146.1 + 166525 0.66 0.939752
Target:  5'- gGCGUCggCCUGGGGAgcccgCggGGcCGUGg -3'
miRNA:   3'- -UGCGGuaGGACUCCUa----GuaCCuGCGC- -5'
28793 3' -55.7 NC_006146.1 + 57327 0.66 0.939752
Target:  5'- -gGCCucUCCcGAGGGUCAgcaUGGAgCGCc -3'
miRNA:   3'- ugCGGu-AGGaCUCCUAGU---ACCU-GCGc -5'
28793 3' -55.7 NC_006146.1 + 68712 0.66 0.938338
Target:  5'- gACGCCGUCCgcguccccgagagcUGucgcGGGGUgGUGGAgGCc -3'
miRNA:   3'- -UGCGGUAGG--------------AC----UCCUAgUACCUgCGc -5'
28793 3' -55.7 NC_006146.1 + 162265 0.66 0.934955
Target:  5'- -aGCCuguuuUCCUGGGGcUCGcugGGGCGUa -3'
miRNA:   3'- ugCGGu----AGGACUCCuAGUa--CCUGCGc -5'
28793 3' -55.7 NC_006146.1 + 9667 0.66 0.929922
Target:  5'- cUGCCGUCgUGGGaGAUguUGGcCGUGg -3'
miRNA:   3'- uGCGGUAGgACUC-CUAguACCuGCGC- -5'
28793 3' -55.7 NC_006146.1 + 121322 0.66 0.924652
Target:  5'- cGCGUCAUCCUgGAGGA-CAUcGAgGCc -3'
miRNA:   3'- -UGCGGUAGGA-CUCCUaGUAcCUgCGc -5'
28793 3' -55.7 NC_006146.1 + 114991 0.66 0.919147
Target:  5'- aACGCC-UCCUgGAGGAagcugCAUGGcUGCu -3'
miRNA:   3'- -UGCGGuAGGA-CUCCUa----GUACCuGCGc -5'
28793 3' -55.7 NC_006146.1 + 33428 0.66 0.913406
Target:  5'- uGCGCCgccgcucgGUCCUGGGGcUCcgGG-UGCa -3'
miRNA:   3'- -UGCGG--------UAGGACUCCuAGuaCCuGCGc -5'
28793 3' -55.7 NC_006146.1 + 156777 0.66 0.911638
Target:  5'- -aGCCAggCCcGAGGGUCAccuaaaguccccccUGGACGgGc -3'
miRNA:   3'- ugCGGUa-GGaCUCCUAGU--------------ACCUGCgC- -5'
28793 3' -55.7 NC_006146.1 + 153699 0.66 0.911638
Target:  5'- -aGCCAggCCcGAGGGUCAccuaaaguccccccUGGACGgGc -3'
miRNA:   3'- ugCGGUa-GGaCUCCUAGU--------------ACCUGCgC- -5'
28793 3' -55.7 NC_006146.1 + 150622 0.66 0.911638
Target:  5'- -aGCCAggCCcGAGGGUCAccuaaaguccccccUGGACGgGc -3'
miRNA:   3'- ugCGGUa-GGaCUCCUAGU--------------ACCUGCgC- -5'
28793 3' -55.7 NC_006146.1 + 147544 0.66 0.911638
Target:  5'- -aGCCAggCCcGAGGGUCAccuaaaguccccccUGGACGgGc -3'
miRNA:   3'- ugCGGUa-GGaCUCCUAGU--------------ACCUGCgC- -5'
28793 3' -55.7 NC_006146.1 + 144466 0.66 0.911638
Target:  5'- -aGCCAggCCcGAGGGUCAccuaaaguccccccUGGACGgGc -3'
miRNA:   3'- ugCGGUa-GGaCUCCUAGU--------------ACCUGCgC- -5'
28793 3' -55.7 NC_006146.1 + 141388 0.66 0.911638
Target:  5'- -aGCCAggCCcGAGGGUCAccuaaaguccccccUGGACGgGc -3'
miRNA:   3'- ugCGGUa-GGaCUCCUAGU--------------ACCUGCgC- -5'
28793 3' -55.7 NC_006146.1 + 81037 0.67 0.901223
Target:  5'- uCGCCccccaCUGAGGcaAUCGaGGACGCGc -3'
miRNA:   3'- uGCGGuag--GACUCC--UAGUaCCUGCGC- -5'
28793 3' -55.7 NC_006146.1 + 28276 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 25198 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 22120 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 19042 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 12887 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.