miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28793 3' -55.7 NC_006146.1 + 4662 0.68 0.866809
Target:  5'- cCGCCGUCCUGGGccggGUGGGCgagGCGg -3'
miRNA:   3'- uGCGGUAGGACUCcuagUACCUG---CGC- -5'
28793 3' -55.7 NC_006146.1 + 8503 0.72 0.665178
Target:  5'- --aCCAUCCUGgcccaccGGGGUCccGGGCGCGg -3'
miRNA:   3'- ugcGGUAGGAC-------UCCUAGuaCCUGCGC- -5'
28793 3' -55.7 NC_006146.1 + 9667 0.66 0.929922
Target:  5'- cUGCCGUCgUGGGaGAUguUGGcCGUGg -3'
miRNA:   3'- uGCGGUAGgACUC-CUAguACCuGCGC- -5'
28793 3' -55.7 NC_006146.1 + 12887 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 15965 0.68 0.843622
Target:  5'- -gGCCGgucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa-------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 19042 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 22120 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 25198 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 28276 0.68 0.874129
Target:  5'- -gGCCGggucucgggUCUGGGGGUCuGUGGugGUGa -3'
miRNA:   3'- ugCGGUa--------GGACUCCUAG-UACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 33428 0.66 0.913406
Target:  5'- uGCGCCgccgcucgGUCCUGGGGcUCcgGG-UGCa -3'
miRNA:   3'- -UGCGG--------UAGGACUCCuAGuaCCuGCGc -5'
28793 3' -55.7 NC_006146.1 + 42256 0.72 0.641825
Target:  5'- cCGCCGUCCccgaaugcgggagGAGGAUgGgUGGugGCGg -3'
miRNA:   3'- uGCGGUAGGa------------CUCCUAgU-ACCugCGC- -5'
28793 3' -55.7 NC_006146.1 + 43971 0.69 0.789617
Target:  5'- aGCGCCAUCCUgccagcgggaGAGGAggCugaguaggccggagGUGGAUGUGg -3'
miRNA:   3'- -UGCGGUAGGA----------CUCCUa-G--------------UACCUGCGC- -5'
28793 3' -55.7 NC_006146.1 + 50355 0.68 0.835505
Target:  5'- -gGCCAgCCUGGGGAUCuUGGccaGCa -3'
miRNA:   3'- ugCGGUaGGACUCCUAGuACCug-CGc -5'
28793 3' -55.7 NC_006146.1 + 57327 0.66 0.939752
Target:  5'- -gGCCucUCCcGAGGGUCAgcaUGGAgCGCc -3'
miRNA:   3'- ugCGGu-AGGaCUCCUAGU---ACCU-GCGc -5'
28793 3' -55.7 NC_006146.1 + 59981 0.78 0.318625
Target:  5'- -aGCCGaCCUGGGGGUCAUGGAgUGCa -3'
miRNA:   3'- ugCGGUaGGACUCCUAGUACCU-GCGc -5'
28793 3' -55.7 NC_006146.1 + 63370 0.68 0.843622
Target:  5'- -gGCCcUCCUGGGGcUCAUguuuaaaccagaGGACGCc -3'
miRNA:   3'- ugCGGuAGGACUCCuAGUA------------CCUGCGc -5'
28793 3' -55.7 NC_006146.1 + 65824 0.68 0.843622
Target:  5'- uGCGCCAggcgcucgagCCcuuUGAGGAcCAUGGACGa- -3'
miRNA:   3'- -UGCGGUa---------GG---ACUCCUaGUACCUGCgc -5'
28793 3' -55.7 NC_006146.1 + 68712 0.66 0.938338
Target:  5'- gACGCCGUCCgcguccccgagagcUGucgcGGGGUgGUGGAgGCc -3'
miRNA:   3'- -UGCGGUAGG--------------AC----UCCUAgUACCUgCGc -5'
28793 3' -55.7 NC_006146.1 + 81037 0.67 0.901223
Target:  5'- uCGCCccccaCUGAGGcaAUCGaGGACGCGc -3'
miRNA:   3'- uGCGGuag--GACUCC--UAGUaCCUGCGC- -5'
28793 3' -55.7 NC_006146.1 + 83367 0.7 0.774006
Target:  5'- -gGCCGUCaugGAGGG-CAUGGAgGCa -3'
miRNA:   3'- ugCGGUAGga-CUCCUaGUACCUgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.