miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28793 5' -55.9 NC_006146.1 + 10236 0.66 0.938881
Target:  5'- cUCUCuGGGCGagAAUCUaa-AGACCCUa -3'
miRNA:   3'- cAGAG-CCCGCa-UUAGAggcUCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 55029 0.66 0.934058
Target:  5'- ---gCGGGCGggaugggGGUCggggCCGGGGCCUg -3'
miRNA:   3'- cagaGCCCGCa------UUAGa---GGCUCUGGGa -5'
28793 5' -55.9 NC_006146.1 + 82451 0.66 0.923708
Target:  5'- aGUUUCGGGUGUAucacugggagauGUCucuUCCGGaauGACCCc -3'
miRNA:   3'- -CAGAGCCCGCAU------------UAG---AGGCU---CUGGGa -5'
28793 5' -55.9 NC_006146.1 + 49025 0.66 0.923708
Target:  5'- ----aGGGCGU--UCUCCGGGGCgCg -3'
miRNA:   3'- cagagCCCGCAuuAGAGGCUCUGgGa -5'
28793 5' -55.9 NC_006146.1 + 129168 0.66 0.92042
Target:  5'- cGUCUCaGGGCccgGUAGagcagguaccaguacUCaUCCGGGACCUUg -3'
miRNA:   3'- -CAGAG-CCCG---CAUU---------------AG-AGGCUCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 118539 0.66 0.918181
Target:  5'- gGUCUCGGGgaugcUGUGcagaAUCUCC-AGAUCCa -3'
miRNA:   3'- -CAGAGCCC-----GCAU----UAGAGGcUCUGGGa -5'
28793 5' -55.9 NC_006146.1 + 121686 0.66 0.910052
Target:  5'- ----aGGGCaucgaccGUAuccuggaccccaugGUCUCCGAGGCCCUg -3'
miRNA:   3'- cagagCCCG-------CAU--------------UAGAGGCUCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 14570 0.67 0.906429
Target:  5'- cUUUCgGGGCGUGAgccccaUCCcGGACCCg -3'
miRNA:   3'- cAGAG-CCCGCAUUag----AGGcUCUGGGa -5'
28793 5' -55.9 NC_006146.1 + 115174 0.67 0.900206
Target:  5'- aUCUUGGGCGUGuacgCgGAGGCCa- -3'
miRNA:   3'- cAGAGCCCGCAUuagaGgCUCUGGga -5'
28793 5' -55.9 NC_006146.1 + 28281 0.67 0.898294
Target:  5'- gGUCUCGGGUcugggggucuGUGGUggugagccuggugcCUCUGgAGGCCCUg -3'
miRNA:   3'- -CAGAGCCCG----------CAUUA--------------GAGGC-UCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 25203 0.67 0.898294
Target:  5'- gGUCUCGGGUcugggggucuGUGGUggugagccuggugcCUCUGgAGGCCCUg -3'
miRNA:   3'- -CAGAGCCCG----------CAUUA--------------GAGGC-UCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 22125 0.67 0.898294
Target:  5'- gGUCUCGGGUcugggggucuGUGGUggugagccuggugcCUCUGgAGGCCCUg -3'
miRNA:   3'- -CAGAGCCCG----------CAUUA--------------GAGGC-UCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 19047 0.67 0.898294
Target:  5'- gGUCUCGGGUcugggggucuGUGGUggugagccuggugcCUCUGgAGGCCCUg -3'
miRNA:   3'- -CAGAGCCCG----------CAUUA--------------GAGGC-UCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 15969 0.67 0.898294
Target:  5'- gGUCUCGGGUcugggggucuGUGGUggugagccuggugcCUCUGgAGGCCCUg -3'
miRNA:   3'- -CAGAGCCCG----------CAUUA--------------GAGGC-UCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 12892 0.67 0.898294
Target:  5'- gGUCUCGGGUcugggggucuGUGGUggugagccuggugcCUCUGgAGGCCCUg -3'
miRNA:   3'- -CAGAGCCCG----------CAUUA--------------GAGGC-UCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 21041 0.67 0.88708
Target:  5'- uUCUCggaGGGCGaGAcgcugcgcuUCgCCGAGGCCCUg -3'
miRNA:   3'- cAGAG---CCCGCaUU---------AGaGGCUCUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 61273 0.68 0.865747
Target:  5'- --aUCGGGC-UGGUCUCaCGGGGgCCUg -3'
miRNA:   3'- cagAGCCCGcAUUAGAG-GCUCUgGGA- -5'
28793 5' -55.9 NC_006146.1 + 112697 0.69 0.823632
Target:  5'- aUCUCGGGUcuggcccgcagcagGgcGUCcCUGAGGCCCg -3'
miRNA:   3'- cAGAGCCCG--------------CauUAGaGGCUCUGGGa -5'
28793 5' -55.9 NC_006146.1 + 154315 0.7 0.773039
Target:  5'- uUCUCGGGaCGUucugggCUCUGAaGCCCUg -3'
miRNA:   3'- cAGAGCCC-GCAuua---GAGGCUcUGGGA- -5'
28793 5' -55.9 NC_006146.1 + 142003 0.7 0.773039
Target:  5'- uUCUCGGGaCGUucugggCUCUGAaGCCCUg -3'
miRNA:   3'- cAGAGCCC-GCAuua---GAGGCUcUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.