miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28794 3' -53.1 NC_006146.1 + 131089 0.66 0.984764
Target:  5'- gCCgcCGGGC-CGUcaACgGCCGCCGUCc -3'
miRNA:   3'- gGGa-GCUCGaGUAaaUG-CGGUGGCAG- -5'
28794 3' -53.1 NC_006146.1 + 151369 0.66 0.984764
Target:  5'- -aCUCGAGCUCGgcgUACGagucCCGCUGc- -3'
miRNA:   3'- ggGAGCUCGAGUaa-AUGC----GGUGGCag -5'
28794 3' -53.1 NC_006146.1 + 127384 0.66 0.984222
Target:  5'- cCCCUCGuggaggugucuuggGGCUgGgcccCGCCGCCGg- -3'
miRNA:   3'- -GGGAGC--------------UCGAgUaaauGCGGUGGCag -5'
28794 3' -53.1 NC_006146.1 + 3135 0.66 0.982899
Target:  5'- gUCUCGAGC-CAUgcGCGCCcacCCGg- -3'
miRNA:   3'- gGGAGCUCGaGUAaaUGCGGu--GGCag -5'
28794 3' -53.1 NC_006146.1 + 120393 0.66 0.982307
Target:  5'- aCCUCuGAGCUCAacguccaaaaccuCGCCGCCa-- -3'
miRNA:   3'- gGGAG-CUCGAGUaaau---------GCGGUGGcag -5'
28794 3' -53.1 NC_006146.1 + 91619 0.66 0.978659
Target:  5'- aCCCUCGAGagUAUcUACGCCuCCuUCu -3'
miRNA:   3'- -GGGAGCUCgaGUAaAUGCGGuGGcAG- -5'
28794 3' -53.1 NC_006146.1 + 67817 0.66 0.978659
Target:  5'- gCCUCGgaaguaaacAGCUCcgUgaggUGCGUCAgCGUCu -3'
miRNA:   3'- gGGAGC---------UCGAGuaA----AUGCGGUgGCAG- -5'
28794 3' -53.1 NC_006146.1 + 3233 0.66 0.976268
Target:  5'- cCCCUCGGGUcgCGggacACGCCcCCGg- -3'
miRNA:   3'- -GGGAGCUCGa-GUaaa-UGCGGuGGCag -5'
28794 3' -53.1 NC_006146.1 + 438 0.66 0.976268
Target:  5'- cCCCUCGGGUcgCGggacACGCCcCCGg- -3'
miRNA:   3'- -GGGAGCUCGa-GUaaa-UGCGGuGGCag -5'
28794 3' -53.1 NC_006146.1 + 2301 0.66 0.976268
Target:  5'- cCCCUCGGGUcgCGggacACGCCcCCGg- -3'
miRNA:   3'- -GGGAGCUCGa-GUaaa-UGCGGuGGCag -5'
28794 3' -53.1 NC_006146.1 + 54809 0.66 0.976268
Target:  5'- aCCCUCGGGUggc----CGCCACCa-- -3'
miRNA:   3'- -GGGAGCUCGaguaaauGCGGUGGcag -5'
28794 3' -53.1 NC_006146.1 + 56648 0.66 0.976268
Target:  5'- gUCCagGGGUcCGUcgauCGCCGCCGUCu -3'
miRNA:   3'- -GGGagCUCGaGUAaau-GCGGUGGCAG- -5'
28794 3' -53.1 NC_006146.1 + 79196 0.66 0.976268
Target:  5'- uCCCUcccaaaCGAGC-CAaaaccgAUGCCACCGUa -3'
miRNA:   3'- -GGGA------GCUCGaGUaaa---UGCGGUGGCAg -5'
28794 3' -53.1 NC_006146.1 + 1369 0.66 0.976268
Target:  5'- cCCCUCGGGUcgCGggacACGCCcCCGg- -3'
miRNA:   3'- -GGGAGCUCGa-GUaaa-UGCGGuGGCag -5'
28794 3' -53.1 NC_006146.1 + 75627 0.67 0.973686
Target:  5'- gCCUUCGGGUUCAaga--GCCGCCa-- -3'
miRNA:   3'- -GGGAGCUCGAGUaaaugCGGUGGcag -5'
28794 3' -53.1 NC_006146.1 + 71138 0.67 0.973686
Target:  5'- gCCCUCGGGCUUAaUUGugggugggacCGgCACUGUg -3'
miRNA:   3'- -GGGAGCUCGAGUaAAU----------GCgGUGGCAg -5'
28794 3' -53.1 NC_006146.1 + 62320 0.67 0.970907
Target:  5'- gCCCagCGAgGC-CAgagACGCCGCCGcCa -3'
miRNA:   3'- -GGGa-GCU-CGaGUaaaUGCGGUGGCaG- -5'
28794 3' -53.1 NC_006146.1 + 104557 0.67 0.967923
Target:  5'- aCCagGGGCUCG---AUGCUGCUGUCa -3'
miRNA:   3'- gGGagCUCGAGUaaaUGCGGUGGCAG- -5'
28794 3' -53.1 NC_006146.1 + 127334 0.67 0.967923
Target:  5'- cCCCggGAacGCUCAg-UACGCCGucuCCGUCu -3'
miRNA:   3'- -GGGagCU--CGAGUaaAUGCGGU---GGCAG- -5'
28794 3' -53.1 NC_006146.1 + 106476 0.67 0.964728
Target:  5'- cUCCUgGcAGCg----UACGCCGCCGUg -3'
miRNA:   3'- -GGGAgC-UCGaguaaAUGCGGUGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.