miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28794 5' -63.1 NC_006146.1 + 28502 0.66 0.671143
Target:  5'- -aGGCGGGGUCCggCCucu-CCUGGGg -3'
miRNA:   3'- ugCUGCCCCGGGgaGGuuacGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 22346 0.66 0.671143
Target:  5'- -aGGCGGGGUCCggCCucu-CCUGGGg -3'
miRNA:   3'- ugCUGCCCCGGGgaGGuuacGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 13112 0.66 0.671143
Target:  5'- -aGGCGGGGUCCggCCucu-CCUGGGg -3'
miRNA:   3'- ugCUGCCCCGGGgaGGuuacGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 16190 0.66 0.671143
Target:  5'- -aGGCGGGGUCCggCCucu-CCUGGGg -3'
miRNA:   3'- ugCUGCCCCGGGgaGGuuacGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 147174 0.66 0.671143
Target:  5'- gGCGGCGcagaccGGcGCCCCUUC---GCCCGGu -3'
miRNA:   3'- -UGCUGC------CC-CGGGGAGGuuaCGGGCCc -5'
28794 5' -63.1 NC_006146.1 + 25424 0.66 0.671143
Target:  5'- -aGGCGGGGUCCggCCucu-CCUGGGg -3'
miRNA:   3'- ugCUGCCCCGGGgaGGuuacGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 19268 0.66 0.671143
Target:  5'- -aGGCGGGGUCCggCCucu-CCUGGGg -3'
miRNA:   3'- ugCUGCCCCGGGgaGGuuacGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 33245 0.66 0.668277
Target:  5'- cCGGCGGGuccgccgggccgcuGCCCCgcUCCGGguggggggugGCCCGGc -3'
miRNA:   3'- uGCUGCCC--------------CGGGG--AGGUUa---------CGGGCCc -5'
28794 5' -63.1 NC_006146.1 + 33121 0.66 0.668277
Target:  5'- cCGGCGGGuucgccgggccgcuGCCCCgcUCCGGguggggggugGCCCGGc -3'
miRNA:   3'- uGCUGCCC--------------CGGGG--AGGUUa---------CGGGCCc -5'
28794 5' -63.1 NC_006146.1 + 72379 0.66 0.667321
Target:  5'- gACGAaacccgagucgggUGGGGCCCCUCCAucacaggaGUcucugcugaccuugGUCCGcGGa -3'
miRNA:   3'- -UGCU-------------GCCCCGGGGAGGU--------UA--------------CGGGC-CC- -5'
28794 5' -63.1 NC_006146.1 + 46603 0.66 0.66158
Target:  5'- cACGAUGGGGUugucggccaggUCUUCCAucaggGCCUuGGGg -3'
miRNA:   3'- -UGCUGCCCCG-----------GGGAGGUua---CGGG-CCC- -5'
28794 5' -63.1 NC_006146.1 + 124123 0.66 0.66158
Target:  5'- cGCGcCGGccGGCCag-CCAuccGCCCGGGg -3'
miRNA:   3'- -UGCuGCC--CCGGggaGGUua-CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 51908 0.66 0.66158
Target:  5'- uCGGCGGGGgC-CUCCGAgGCaccgaCGGGc -3'
miRNA:   3'- uGCUGCCCCgGgGAGGUUaCGg----GCCC- -5'
28794 5' -63.1 NC_006146.1 + 129151 0.66 0.66158
Target:  5'- cCGGCGGGaaGCCCacccgUCuCAggGCCCGGu -3'
miRNA:   3'- uGCUGCCC--CGGGg----AG-GUuaCGGGCCc -5'
28794 5' -63.1 NC_006146.1 + 156887 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 153809 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 150731 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 147654 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 144576 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 141498 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.