miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28794 5' -63.1 NC_006146.1 + 72379 0.66 0.667321
Target:  5'- gACGAaacccgagucgggUGGGGCCCCUCCAucacaggaGUcucugcugaccuugGUCCGcGGa -3'
miRNA:   3'- -UGCU-------------GCCCCGGGGAGGU--------UA--------------CGGGC-CC- -5'
28794 5' -63.1 NC_006146.1 + 52407 0.66 0.651036
Target:  5'- uACGugGGGGCCgucaagaCCguggCCucUGCCCuccaguuuGGGg -3'
miRNA:   3'- -UGCugCCCCGG-------GGa---GGuuACGGG--------CCC- -5'
28794 5' -63.1 NC_006146.1 + 131315 0.66 0.642398
Target:  5'- gGCGGgGGGGCuggaguCCCUCUucAUGCCCuccaGGa -3'
miRNA:   3'- -UGCUgCCCCG------GGGAGGu-UACGGGc---CC- -5'
28794 5' -63.1 NC_006146.1 + 77920 0.66 0.642398
Target:  5'- -gGGCGGgcGGCCUCgcaGGUGCCgGGGg -3'
miRNA:   3'- ugCUGCC--CCGGGGaggUUACGGgCCC- -5'
28794 5' -63.1 NC_006146.1 + 125212 0.66 0.642398
Target:  5'- uGCGACGGGcgcucagaGCCCUUCCGcucCCUGGcGg -3'
miRNA:   3'- -UGCUGCCC--------CGGGGAGGUuacGGGCC-C- -5'
28794 5' -63.1 NC_006146.1 + 103642 0.66 0.627029
Target:  5'- cGCGGaggaGGGGCCcgccuauccccccagCCUCCGuggcuuccuGUGCCUGGc -3'
miRNA:   3'- -UGCUg---CCCCGG---------------GGAGGU---------UACGGGCCc -5'
28794 5' -63.1 NC_006146.1 + 90112 0.66 0.623187
Target:  5'- aAUGA-GGGGCCuCCUCUGggguaucuccAUGCCUGGu -3'
miRNA:   3'- -UGCUgCCCCGG-GGAGGU----------UACGGGCCc -5'
28794 5' -63.1 NC_006146.1 + 8783 0.66 0.623187
Target:  5'- cCGugGGacGGCCCC-CCAGUGCacacuuucccaaCCGcGGa -3'
miRNA:   3'- uGCugCC--CCGGGGaGGUUACG------------GGC-CC- -5'
28794 5' -63.1 NC_006146.1 + 162372 0.66 0.622227
Target:  5'- -aGAUGGaGCCCCUuggcgcgCCcgcGCCCGGGa -3'
miRNA:   3'- ugCUGCCcCGGGGA-------GGuuaCGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 785 0.66 0.651996
Target:  5'- gACGACGGGacGCCCCgCCg--GCCCc-- -3'
miRNA:   3'- -UGCUGCCC--CGGGGaGGuuaCGGGccc -5'
28794 5' -63.1 NC_006146.1 + 1716 0.66 0.651996
Target:  5'- gACGACGGGacGCCCCgCCg--GCCCc-- -3'
miRNA:   3'- -UGCUGCCC--CGGGGaGGuuaCGGGccc -5'
28794 5' -63.1 NC_006146.1 + 2648 0.66 0.651996
Target:  5'- gACGACGGGacGCCCCgCCg--GCCCc-- -3'
miRNA:   3'- -UGCUGCCC--CGGGGaGGuuaCGGGccc -5'
28794 5' -63.1 NC_006146.1 + 124123 0.66 0.66158
Target:  5'- cGCGcCGGccGGCCag-CCAuccGCCCGGGg -3'
miRNA:   3'- -UGCuGCC--CCGGggaGGUua-CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 156887 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 153809 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 150731 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 147654 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 144576 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 141498 0.66 0.659664
Target:  5'- -gGACGGGGCUggaCUCgGGgcgaguggacggGCCUGGGa -3'
miRNA:   3'- ugCUGCCCCGGg--GAGgUUa-----------CGGGCCC- -5'
28794 5' -63.1 NC_006146.1 + 3580 0.66 0.651996
Target:  5'- gACGACGGGacGCCCCgCCg--GCCCc-- -3'
miRNA:   3'- -UGCUGCCC--CGGGGaGGuuaCGGGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.