miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28796 3' -59.7 NC_006146.1 + 55824 0.65 0.775681
Target:  5'- aGGCCGUCCcggCCUGggugGGCggaauguucgcccCCUUCCCCUc -3'
miRNA:   3'- -UUGGCAGG---GGAUa---UCGa------------GGGAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 18666 0.66 0.770174
Target:  5'- cAGCCGcUCCCCggccucCUCuCCUCCCUg -3'
miRNA:   3'- -UUGGC-AGGGGauauc-GAG-GGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 24822 0.66 0.770174
Target:  5'- cAGCCGcUCCCCggccucCUCuCCUCCCUg -3'
miRNA:   3'- -UUGGC-AGGGGauauc-GAG-GGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 27900 0.66 0.770174
Target:  5'- cAGCCGcUCCCCggccucCUCuCCUCCCUg -3'
miRNA:   3'- -UUGGC-AGGGGauauc-GAG-GGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 15588 0.66 0.770174
Target:  5'- cAGCCGcUCCCCggccucCUCuCCUCCCUg -3'
miRNA:   3'- -UUGGC-AGGGGauauc-GAG-GGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 21744 0.66 0.770174
Target:  5'- cAGCCGcUCCCCggccucCUCuCCUCCCUg -3'
miRNA:   3'- -UUGGC-AGGGGauauc-GAG-GGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 12509 0.66 0.770174
Target:  5'- cAGCCGcUCCCCggccucCUCuCCUCCCUg -3'
miRNA:   3'- -UUGGC-AGGGGauauc-GAG-GGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 121971 0.66 0.766479
Target:  5'- aGGCUgGUCCCCgacacaaacCUCCUUCCCCUu -3'
miRNA:   3'- -UUGG-CAGGGGauauc----GAGGGAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 127718 0.66 0.760902
Target:  5'- gGGCCGUCagaaaggCCagGUAGCUCCCUgagccUCCCg -3'
miRNA:   3'- -UUGGCAGg------GGa-UAUCGAGGGA-----GGGGa -5'
28796 3' -59.7 NC_006146.1 + 57192 0.66 0.760902
Target:  5'- cACCGUCCCggCUGccGCcgCCgUCCCCg -3'
miRNA:   3'- uUGGCAGGG--GAUauCGa-GGgAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 834 0.66 0.760902
Target:  5'- cGGCCaUCCCCacgcgcGGCcccgggCCCUCCCCg -3'
miRNA:   3'- -UUGGcAGGGGaua---UCGa-----GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 1766 0.66 0.760902
Target:  5'- cGGCCaUCCCCacgcgcGGCcccgggCCCUCCCCg -3'
miRNA:   3'- -UUGGcAGGGGaua---UCGa-----GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 2698 0.66 0.760902
Target:  5'- cGGCCaUCCCCacgcgcGGCcccgggCCCUCCCCg -3'
miRNA:   3'- -UUGGcAGGGGaua---UCGa-----GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 3630 0.66 0.760902
Target:  5'- cGGCCaUCCCCacgcgcGGCcccgggCCCUCCCCg -3'
miRNA:   3'- -UUGGcAGGGGaua---UCGa-----GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 24149 0.66 0.751521
Target:  5'- -uCUGUCCCCUucc-UUCCCUCgCCCa -3'
miRNA:   3'- uuGGCAGGGGAuaucGAGGGAG-GGGa -5'
28796 3' -59.7 NC_006146.1 + 17993 0.66 0.751521
Target:  5'- -uCUGUCCCCUucc-UUCCCUCgCCCa -3'
miRNA:   3'- uuGGCAGGGGAuaucGAGGGAG-GGGa -5'
28796 3' -59.7 NC_006146.1 + 14916 0.66 0.751521
Target:  5'- -uCUGUCCCCUucc-UUCCCUCgCCCa -3'
miRNA:   3'- uuGGCAGGGGAuaucGAGGGAG-GGGa -5'
28796 3' -59.7 NC_006146.1 + 27227 0.66 0.751521
Target:  5'- -uCUGUCCCCUucc-UUCCCUCgCCCa -3'
miRNA:   3'- uuGGCAGGGGAuaucGAGGGAG-GGGa -5'
28796 3' -59.7 NC_006146.1 + 58887 0.66 0.751521
Target:  5'- cAGCCGUCUUCgcugacUGGuCUCCCUCUCUg -3'
miRNA:   3'- -UUGGCAGGGGau----AUC-GAGGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 21071 0.66 0.751521
Target:  5'- -uCUGUCCCCUucc-UUCCCUCgCCCa -3'
miRNA:   3'- uuGGCAGGGGAuaucGAGGGAG-GGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.