miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28796 3' -59.7 NC_006146.1 + 34861 0.66 0.742038
Target:  5'- aAACCuagaggaagGgaaCCCUAUAGUguaaUCCCUCCCCc -3'
miRNA:   3'- -UUGG---------Cag-GGGAUAUCG----AGGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 17143 0.66 0.732464
Target:  5'- -uCCGUCCUCccUGGCcacuccccacCCCUCCCCg -3'
miRNA:   3'- uuGGCAGGGGauAUCGa---------GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 14065 0.66 0.732464
Target:  5'- -uCCGUCCUCccUGGCcacuccccacCCCUCCCCg -3'
miRNA:   3'- uuGGCAGGGGauAUCGa---------GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 20221 0.66 0.732464
Target:  5'- -uCCGUCCUCccUGGCcacuccccacCCCUCCCCg -3'
miRNA:   3'- uuGGCAGGGGauAUCGa---------GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 29455 0.66 0.732464
Target:  5'- -uCCGUCCUCccUGGCcacuccccacCCCUCCCCg -3'
miRNA:   3'- uuGGCAGGGGauAUCGa---------GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 23299 0.66 0.732464
Target:  5'- -uCCGUCCUCccUGGCcacuccccacCCCUCCCCg -3'
miRNA:   3'- uuGGCAGGGGauAUCGa---------GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 26377 0.66 0.732464
Target:  5'- -uCCGUCCUCccUGGCcacuccccacCCCUCCCCg -3'
miRNA:   3'- uuGGCAGGGGauAUCGa---------GGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 156086 0.67 0.703274
Target:  5'- aGACCGUgCCCUccuccGGCccggccggccucUCCUUCCCCUc -3'
miRNA:   3'- -UUGGCAgGGGAua---UCG------------AGGGAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 16385 0.67 0.693418
Target:  5'- cAGgCGUCCuCCUGgu-CUCCgCUCCCCUc -3'
miRNA:   3'- -UUgGCAGG-GGAUaucGAGG-GAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 69194 0.67 0.693418
Target:  5'- gAGCCaaacCCCCgcu-GCUCUCUCCCCc -3'
miRNA:   3'- -UUGGca--GGGGauauCGAGGGAGGGGa -5'
28796 3' -59.7 NC_006146.1 + 100195 0.67 0.693418
Target:  5'- -cCCGcUCCuCCUG-AGCUCCCgUUCCCa -3'
miRNA:   3'- uuGGC-AGG-GGAUaUCGAGGG-AGGGGa -5'
28796 3' -59.7 NC_006146.1 + 28697 0.67 0.693418
Target:  5'- cAGgCGUCCuCCUGgu-CUCCgCUCCCCUc -3'
miRNA:   3'- -UUgGCAGG-GGAUaucGAGG-GAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 25619 0.67 0.693418
Target:  5'- cAGgCGUCCuCCUGgu-CUCCgCUCCCCUc -3'
miRNA:   3'- -UUgGCAGG-GGAUaucGAGG-GAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 22541 0.67 0.693418
Target:  5'- cAGgCGUCCuCCUGgu-CUCCgCUCCCCUc -3'
miRNA:   3'- -UUgGCAGG-GGAUaucGAGG-GAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 19463 0.67 0.693418
Target:  5'- cAGgCGUCCuCCUGgu-CUCCgCUCCCCUc -3'
miRNA:   3'- -UUgGCAGG-GGAUaucGAGG-GAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 13307 0.67 0.693418
Target:  5'- cAGgCGUCCuCCUGgu-CUCCgCUCCCCUc -3'
miRNA:   3'- -UUgGCAGG-GGAUaucGAGG-GAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 29024 0.67 0.683512
Target:  5'- aGGCCcugGUCCCCagcAGC-CUCUCCCCUc -3'
miRNA:   3'- -UUGG---CAGGGGauaUCGaGGGAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 22869 0.67 0.683512
Target:  5'- aGGCCcugGUCCCCagcAGC-CUCUCCCCUc -3'
miRNA:   3'- -UUGG---CAGGGGauaUCGaGGGAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 19791 0.67 0.683512
Target:  5'- aGGCCcugGUCCCCagcAGC-CUCUCCCCUc -3'
miRNA:   3'- -UUGG---CAGGGGauaUCGaGGGAGGGGA- -5'
28796 3' -59.7 NC_006146.1 + 16713 0.67 0.683512
Target:  5'- aGGCCcugGUCCCCagcAGC-CUCUCCCCUc -3'
miRNA:   3'- -UUGG---CAGGGGauaUCGaGGGAGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.