miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28796 5' -60.1 NC_006146.1 + 136247 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135690 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135225 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135132 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135875 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135411 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135968 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 115786 0.66 0.76664
Target:  5'- uGGAGGU---GGAGGCCCu---GGAGCu -3'
miRNA:   3'- -UCUCCGcucCCUCCGGGucguUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 135318 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 136433 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 136619 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 78013 0.66 0.76664
Target:  5'- --cGGgGGGuGGuGGCCUAGCAGGuaccugGGCu -3'
miRNA:   3'- ucuCCgCUC-CCuCCGGGUCGUUC------UCG- -5'
28796 5' -60.1 NC_006146.1 + 135504 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 136061 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 136154 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135597 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 136340 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 136526 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 135782 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 137548 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.