miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28796 5' -60.1 NC_006146.1 + 137548 0.66 0.76664
Target:  5'- --cGGCGGGGGGuGGCCgGGCcgcuGCc -3'
miRNA:   3'- ucuCCGCUCCCU-CCGGgUCGuucuCG- -5'
28796 5' -60.1 NC_006146.1 + 143049 0.66 0.757384
Target:  5'- gAGGGGCccGAGGGccugaaAGGcCCCGGCGccuGGCu -3'
miRNA:   3'- -UCUCCG--CUCCC------UCC-GGGUCGUuc-UCG- -5'
28796 5' -60.1 NC_006146.1 + 113496 0.66 0.756453
Target:  5'- uAGAGGCGuGcGucGGCCgGGCAcggucgcGGGGCc -3'
miRNA:   3'- -UCUCCGCuC-CcuCCGGgUCGU-------UCUCG- -5'
28796 5' -60.1 NC_006146.1 + 136190 0.66 0.748023
Target:  5'- cGAGGUaggauAGGGGGGuacCCCAGUAGGAa- -3'
miRNA:   3'- uCUCCGc----UCCCUCC---GGGUCGUUCUcg -5'
28796 5' -60.1 NC_006146.1 + 127940 0.66 0.748023
Target:  5'- aGGAGGagaGAGGauGGGCCUcgucGCGGGAGUc -3'
miRNA:   3'- -UCUCCg--CUCCc-UCCGGGu---CGUUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 113969 0.66 0.748023
Target:  5'- aAGAGGgGGGugcccGGGGGCUCcGCGuuguugaaGGAGCu -3'
miRNA:   3'- -UCUCCgCUC-----CCUCCGGGuCGU--------UCUCG- -5'
28796 5' -60.1 NC_006146.1 + 138849 0.66 0.747082
Target:  5'- uAGAGGCGAGGGGaauugcuGGaCUUAGUGcaGGCa -3'
miRNA:   3'- -UCUCCGCUCCCU-------CC-GGGUCGUucUCG- -5'
28796 5' -60.1 NC_006146.1 + 118059 0.66 0.746139
Target:  5'- -cGGGCGGGGGcggcggcggcucGGCCCuccGCAuccuGGGCa -3'
miRNA:   3'- ucUCCGCUCCCu-----------CCGGGu--CGUu---CUCG- -5'
28796 5' -60.1 NC_006146.1 + 115373 0.66 0.744252
Target:  5'- uGGcGGCGGagcuGGAGGCCCuggccgcucgcguGCAGGAGg -3'
miRNA:   3'- -UCuCCGCUc---CCUCCGGGu------------CGUUCUCg -5'
28796 5' -60.1 NC_006146.1 + 146127 0.66 0.757384
Target:  5'- gAGGGGCccGAGGGccugaaAGGcCCCGGCGccuGGCu -3'
miRNA:   3'- -UCUCCG--CUCCC------UCC-GGGUCGUuc-UCG- -5'
28796 5' -60.1 NC_006146.1 + 149205 0.66 0.757384
Target:  5'- gAGGGGCccGAGGGccugaaAGGcCCCGGCGccuGGCu -3'
miRNA:   3'- -UCUCCG--CUCCC------UCC-GGGUCGUuc-UCG- -5'
28796 5' -60.1 NC_006146.1 + 152283 0.66 0.757384
Target:  5'- gAGGGGCccGAGGGccugaaAGGcCCCGGCGccuGGCu -3'
miRNA:   3'- -UCUCCG--CUCCC------UCC-GGGUCGUuc-UCG- -5'
28796 5' -60.1 NC_006146.1 + 23902 0.66 0.76664
Target:  5'- gGGAaGCGAuGGGGGgcgaagauugcGCCCAGCcccuccugccccAAGGGCg -3'
miRNA:   3'- -UCUcCGCU-CCCUC-----------CGGGUCG------------UUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 58234 0.66 0.7611
Target:  5'- cGGGGGCGuGGacaagggcuauaaaaGGGGCCCGGU---GGCc -3'
miRNA:   3'- -UCUCCGCuCC---------------CUCCGGGUCGuucUCG- -5'
28796 5' -60.1 NC_006146.1 + 124155 0.66 0.757384
Target:  5'- gGGAGGCGAGGacccuGGCC-AGCGu-GGCc -3'
miRNA:   3'- -UCUCCGCUCCcu---CCGGgUCGUucUCG- -5'
28796 5' -60.1 NC_006146.1 + 114348 0.66 0.757384
Target:  5'- cGGAGGUGGacGGGGGCCUGGCccgcguGAcGCg -3'
miRNA:   3'- -UCUCCGCUc-CCUCCGGGUCGuu----CU-CG- -5'
28796 5' -60.1 NC_006146.1 + 67866 0.66 0.757384
Target:  5'- --cGGCGcuguauGaGAGGCCCuGCAAGAGg -3'
miRNA:   3'- ucuCCGCu-----CcCUCCGGGuCGUUCUCg -5'
28796 5' -60.1 NC_006146.1 + 14799 0.66 0.757384
Target:  5'- gAGGGGaaggaGAGGccGGCCgGGCcggagGAGGGCa -3'
miRNA:   3'- -UCUCCg----CUCCcuCCGGgUCG-----UUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 158440 0.66 0.757384
Target:  5'- gAGGGGCccGAGGGccugaaAGGcCCCGGCGccuGGCu -3'
miRNA:   3'- -UCUCCG--CUCCC------UCC-GGGUCGUuc-UCG- -5'
28796 5' -60.1 NC_006146.1 + 155361 0.66 0.757384
Target:  5'- gAGGGGCccGAGGGccugaaAGGcCCCGGCGccuGGCu -3'
miRNA:   3'- -UCUCCG--CUCCC------UCC-GGGUCGUuc-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.