miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28796 5' -60.1 NC_006146.1 + 274 0.67 0.659457
Target:  5'- ---cGUGAGGGGGaGCCCGGgaagaccCGGGGGCg -3'
miRNA:   3'- ucucCGCUCCCUC-CGGGUC-------GUUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 512 0.71 0.448505
Target:  5'- cGAGGCccccaGGGGAGGCCCGGCc----- -3'
miRNA:   3'- uCUCCGc----UCCCUCCGGGUCGuucucg -5'
28796 5' -60.1 NC_006146.1 + 583 0.74 0.292595
Target:  5'- gAGGGGcCGGGGGcgcGGCCCGGCGccAGCc -3'
miRNA:   3'- -UCUCC-GCUCCCu--CCGGGUCGUucUCG- -5'
28796 5' -60.1 NC_006146.1 + 1205 0.67 0.659457
Target:  5'- ---cGUGAGGGGGaGCCCGGgaagaccCGGGGGCg -3'
miRNA:   3'- ucucCGCUCCCUC-CGGGUC-------GUUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 1443 0.71 0.448505
Target:  5'- cGAGGCccccaGGGGAGGCCCGGCc----- -3'
miRNA:   3'- uCUCCGc----UCCCUCCGGGUCGuucucg -5'
28796 5' -60.1 NC_006146.1 + 1514 0.74 0.292595
Target:  5'- gAGGGGcCGGGGGcgcGGCCCGGCGccAGCc -3'
miRNA:   3'- -UCUCC-GCUCCCu--CCGGGUCGUucUCG- -5'
28796 5' -60.1 NC_006146.1 + 2137 0.67 0.659457
Target:  5'- ---cGUGAGGGGGaGCCCGGgaagaccCGGGGGCg -3'
miRNA:   3'- ucucCGCUCCCUC-CGGGUC-------GUUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 2375 0.71 0.448505
Target:  5'- cGAGGCccccaGGGGAGGCCCGGCc----- -3'
miRNA:   3'- uCUCCGc----UCCCUCCGGGUCGuucucg -5'
28796 5' -60.1 NC_006146.1 + 2446 0.74 0.292595
Target:  5'- gAGGGGcCGGGGGcgcGGCCCGGCGccAGCc -3'
miRNA:   3'- -UCUCC-GCUCCCu--CCGGGUCGUucUCG- -5'
28796 5' -60.1 NC_006146.1 + 3069 0.67 0.659457
Target:  5'- ---cGUGAGGGGGaGCCCGGgaagaccCGGGGGCg -3'
miRNA:   3'- ucucCGCUCCCUC-CGGGUC-------GUUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 3307 0.71 0.448505
Target:  5'- cGAGGCccccaGGGGAGGCCCGGCc----- -3'
miRNA:   3'- uCUCCGc----UCCCUCCGGGUCGuucucg -5'
28796 5' -60.1 NC_006146.1 + 3378 0.74 0.292595
Target:  5'- gAGGGGcCGGGGGcgcGGCCCGGCGccAGCc -3'
miRNA:   3'- -UCUCC-GCUCCCu--CCGGGUCGUucUCG- -5'
28796 5' -60.1 NC_006146.1 + 3790 0.72 0.422278
Target:  5'- gGGGGGgGGGGGGGGCac-GCGGGGGa -3'
miRNA:   3'- -UCUCCgCUCCCUCCGgguCGUUCUCg -5'
28796 5' -60.1 NC_006146.1 + 4684 0.7 0.53594
Target:  5'- cGAGGCGGGGGcagaucagauguuugAGGUgCAGCAcggcucAGAGa -3'
miRNA:   3'- uCUCCGCUCCC---------------UCCGgGUCGU------UCUCg -5'
28796 5' -60.1 NC_006146.1 + 7913 0.7 0.532084
Target:  5'- aGGAGGcCGAGgagaaGGGGGaCCCGGgaaAGGGGCg -3'
miRNA:   3'- -UCUCC-GCUC-----CCUCC-GGGUCg--UUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 9917 0.79 0.142345
Target:  5'- aGGAGGCGAcGGA-GCCCgcgAGCAGGAGCa -3'
miRNA:   3'- -UCUCCGCUcCCUcCGGG---UCGUUCUCG- -5'
28796 5' -60.1 NC_006146.1 + 10665 0.68 0.62958
Target:  5'- -uGGGaCG-GGGAGGCCCggGGCGAuacccgcGGGCa -3'
miRNA:   3'- ucUCC-GCuCCCUCCGGG--UCGUU-------CUCG- -5'
28796 5' -60.1 NC_006146.1 + 11143 0.67 0.7097
Target:  5'- uGGGGGCGGuGGuGGUCacggaGGCAuucaaGGAGCg -3'
miRNA:   3'- -UCUCCGCUcCCuCCGGg----UCGU-----UCUCG- -5'
28796 5' -60.1 NC_006146.1 + 11802 0.68 0.640544
Target:  5'- cAGGGGCuGGGGA--CCCuGCAGGAGg -3'
miRNA:   3'- -UCUCCGcUCCCUccGGGuCGUUCUCg -5'
28796 5' -60.1 NC_006146.1 + 11868 0.7 0.531121
Target:  5'- uGGGGCGGGcccgacguugacuGGcaccaacgGGGCCCGGCAacuacgcgguGGAGCa -3'
miRNA:   3'- uCUCCGCUC-------------CC--------UCCGGGUCGU----------UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.