miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28797 3' -62.3 NC_006146.1 + 20673 0.66 0.680767
Target:  5'- --cUGGCCAGUcugcugaccuccugGCUGGCCaaGCGCa -3'
miRNA:   3'- ccaACCGGUCGca------------CGACCGGg-CGCGc -5'
28797 3' -62.3 NC_006146.1 + 107776 0.66 0.679801
Target:  5'- --aUGGCCAGCG-GUcccaggGGCaCCuGCGCa -3'
miRNA:   3'- ccaACCGGUCGCaCGa-----CCG-GG-CGCGc -5'
28797 3' -62.3 NC_006146.1 + 121344 0.66 0.679801
Target:  5'- ---aGGCCAuGCuggGcCUGGCCgGCGUGg -3'
miRNA:   3'- ccaaCCGGU-CGca-C-GACCGGgCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 129252 0.66 0.679801
Target:  5'- aGGUgaggcgcgagGGUCAGgGaugugggGCUGGUCUGCGCc -3'
miRNA:   3'- -CCAa---------CCGGUCgCa------CGACCGGGCGCGc -5'
28797 3' -62.3 NC_006146.1 + 157762 0.66 0.670119
Target:  5'- uGGgaGGuCCGGgGUGUUGaGCCUGCuGCc -3'
miRNA:   3'- -CCaaCC-GGUCgCACGAC-CGGGCG-CGc -5'
28797 3' -62.3 NC_006146.1 + 151607 0.66 0.670119
Target:  5'- uGGgaGGuCCGGgGUGUUGaGCCUGCuGCc -3'
miRNA:   3'- -CCaaCC-GGUCgCACGAC-CGGGCG-CGc -5'
28797 3' -62.3 NC_006146.1 + 148529 0.66 0.670119
Target:  5'- uGGgaGGuCCGGgGUGUUGaGCCUGCuGCc -3'
miRNA:   3'- -CCaaCC-GGUCgCACGAC-CGGGCG-CGc -5'
28797 3' -62.3 NC_006146.1 + 145451 0.66 0.670119
Target:  5'- uGGgaGGuCCGGgGUGUUGaGCCUGCuGCc -3'
miRNA:   3'- -CCaaCC-GGUCgCACGAC-CGGGCG-CGc -5'
28797 3' -62.3 NC_006146.1 + 142373 0.66 0.670119
Target:  5'- uGGgaGGuCCGGgGUGUUGaGCCUGCuGCc -3'
miRNA:   3'- -CCaaCC-GGUCgCACGAC-CGGGCG-CGc -5'
28797 3' -62.3 NC_006146.1 + 167634 0.66 0.670119
Target:  5'- gGGUcccgcggGGCCcggcGCGUGCcgggGGCCCGgGgGc -3'
miRNA:   3'- -CCAa------CCGGu---CGCACGa---CCGGGCgCgC- -5'
28797 3' -62.3 NC_006146.1 + 128864 0.66 0.670119
Target:  5'- aGGaagGGCCacgaagagggGGCGgagGCgGGCCCGaaCGCGg -3'
miRNA:   3'- -CCaa-CCGG----------UCGCa--CGaCCGGGC--GCGC- -5'
28797 3' -62.3 NC_006146.1 + 106266 0.66 0.666239
Target:  5'- --cUGGCCccGGCGgaagacauccucCUGGCCUGCGCc -3'
miRNA:   3'- ccaACCGG--UCGCac----------GACCGGGCGCGc -5'
28797 3' -62.3 NC_006146.1 + 170115 0.66 0.664297
Target:  5'- gGGggGGCCGGCGggGCgUcccgucgucacgcucGGCUgcaCGCGCGg -3'
miRNA:   3'- -CCaaCCGGUCGCa-CG-A---------------CCGG---GCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 167320 0.66 0.664297
Target:  5'- gGGggGGCCGGCGggGCgUcccgucgucacgcucGGCUgcaCGCGCGg -3'
miRNA:   3'- -CCaaCCGGUCGCa-CG-A---------------CCGG---GCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 169184 0.66 0.664297
Target:  5'- gGGggGGCCGGCGggGCgUcccgucgucacgcucGGCUgcaCGCGCGg -3'
miRNA:   3'- -CCaaCCGGUCGCa-CG-A---------------CCGG---GCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 168252 0.66 0.664297
Target:  5'- gGGggGGCCGGCGggGCgUcccgucgucacgcucGGCUgcaCGCGCGg -3'
miRNA:   3'- -CCaaCCGGUCGCa-CG-A---------------CCGG---GCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 98997 0.66 0.66041
Target:  5'- aGGUcagaGGCC-GCGcGCaggagGGUCCGCGUGa -3'
miRNA:   3'- -CCAa---CCGGuCGCaCGa----CCGGGCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 111146 0.66 0.66041
Target:  5'- aGG-UGGCCgGGCG-GCUGGCCuccucccucuaCGUGUa -3'
miRNA:   3'- -CCaACCGG-UCGCaCGACCGG-----------GCGCGc -5'
28797 3' -62.3 NC_006146.1 + 111849 0.66 0.650681
Target:  5'- ----cGCCcuGCGUGUcGGCCCGCuGCGc -3'
miRNA:   3'- ccaacCGGu-CGCACGaCCGGGCG-CGC- -5'
28797 3' -62.3 NC_006146.1 + 51933 0.66 0.650681
Target:  5'- cGGgcGGCCccgGUGC-GGUCUGCGCGc -3'
miRNA:   3'- -CCaaCCGGucgCACGaCCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.