miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28797 3' -62.3 NC_006146.1 + 111009 1.11 0.000681
Target:  5'- aGGUUGGCCAGCGUGCUGGCCCGCGCGg -3'
miRNA:   3'- -CCAACCGGUCGCACGACCGGGCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 115123 0.78 0.140952
Target:  5'- --cUGGCCAGCGUGgUGGCCuCGCuGCc -3'
miRNA:   3'- ccaACCGGUCGCACgACCGG-GCG-CGc -5'
28797 3' -62.3 NC_006146.1 + 168485 0.77 0.171232
Target:  5'- uGGgaGGCCAcGUGUGgaGGCCCGCGg- -3'
miRNA:   3'- -CCaaCCGGU-CGCACgaCCGGGCGCgc -5'
28797 3' -62.3 NC_006146.1 + 167553 0.77 0.171232
Target:  5'- uGGgaGGCCAcGUGUGgaGGCCCGCGg- -3'
miRNA:   3'- -CCaaCCGGU-CGCACgaCCGGGCGCgc -5'
28797 3' -62.3 NC_006146.1 + 169417 0.77 0.171232
Target:  5'- uGGgaGGCCAcGUGUGgaGGCCCGCGg- -3'
miRNA:   3'- -CCaaCCGGU-CGCACgaCCGGGCGCgc -5'
28797 3' -62.3 NC_006146.1 + 170348 0.77 0.171232
Target:  5'- uGGgaGGCCAcGUGUGgaGGCCCGCGg- -3'
miRNA:   3'- -CCaaCCGGU-CGCACgaCCGGGCGCgc -5'
28797 3' -62.3 NC_006146.1 + 57378 0.76 0.188459
Target:  5'- cGGUgGcGCCGGUGgGCUGGCCC-CGCGa -3'
miRNA:   3'- -CCAaC-CGGUCGCaCGACCGGGcGCGC- -5'
28797 3' -62.3 NC_006146.1 + 65486 0.72 0.318288
Target:  5'- gGGUgcugagcUGGCCGGCGUgggGCUGGUUgGUGUGg -3'
miRNA:   3'- -CCA-------ACCGGUCGCA---CGACCGGgCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 168220 0.72 0.318981
Target:  5'- gGGaUGGCCGGCGgGaggGGCCgGCGCc -3'
miRNA:   3'- -CCaACCGGUCGCaCga-CCGGgCGCGc -5'
28797 3' -62.3 NC_006146.1 + 167288 0.72 0.318981
Target:  5'- gGGaUGGCCGGCGgGaggGGCCgGCGCc -3'
miRNA:   3'- -CCaACCGGUCGCaCga-CCGGgCGCGc -5'
28797 3' -62.3 NC_006146.1 + 169152 0.72 0.318981
Target:  5'- gGGaUGGCCGGCGgGaggGGCCgGCGCc -3'
miRNA:   3'- -CCaACCGGUCGCaCga-CCGGgCGCGc -5'
28797 3' -62.3 NC_006146.1 + 170084 0.72 0.318981
Target:  5'- gGGaUGGCCGGCGgGaggGGCCgGCGCc -3'
miRNA:   3'- -CCaACCGGUCGCaCga-CCGGgCGCGc -5'
28797 3' -62.3 NC_006146.1 + 41610 0.72 0.340292
Target:  5'- cGGggGGCUGGUccGCUgGGCCCGgGCGc -3'
miRNA:   3'- -CCaaCCGGUCGcaCGA-CCGGGCgCGC- -5'
28797 3' -62.3 NC_006146.1 + 150684 0.71 0.362615
Target:  5'- gGGgagUGGCCAGgGggacggaggGcCUGGCCUGCGgGg -3'
miRNA:   3'- -CCa--ACCGGUCgCa--------C-GACCGGGCGCgC- -5'
28797 3' -62.3 NC_006146.1 + 39428 0.71 0.362615
Target:  5'- aGUUGGCCGGgGc-CUGGCCCGUGa- -3'
miRNA:   3'- cCAACCGGUCgCacGACCGGGCGCgc -5'
28797 3' -62.3 NC_006146.1 + 59896 0.71 0.370279
Target:  5'- ---gGGCCAGCacGCUGGCCaaccugcuggUGCGCGg -3'
miRNA:   3'- ccaaCCGGUCGcaCGACCGG----------GCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 24426 0.71 0.385935
Target:  5'- ---aGGCCGccugcaaccaauGgGUGCUGcGCCCGCGUGu -3'
miRNA:   3'- ccaaCCGGU------------CgCACGAC-CGGGCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 167802 0.7 0.410224
Target:  5'- uGGgcgUGGCgGGCGcGCgUGGCCCGCcccCGg -3'
miRNA:   3'- -CCa--ACCGgUCGCaCG-ACCGGGCGc--GC- -5'
28797 3' -62.3 NC_006146.1 + 169666 0.7 0.410224
Target:  5'- uGGgcgUGGCgGGCGcGCgUGGCCCGCcccCGg -3'
miRNA:   3'- -CCa--ACCGgUCGCaCG-ACCGGGCGc--GC- -5'
28797 3' -62.3 NC_006146.1 + 168734 0.7 0.410224
Target:  5'- uGGgcgUGGCgGGCGcGCgUGGCCCGCcccCGg -3'
miRNA:   3'- -CCa--ACCGgUCGCaCG-ACCGGGCGc--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.