miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28797 3' -62.3 NC_006146.1 + 36167 0.66 0.640937
Target:  5'- cGUUGGCCug---GCUGGCCUgGUGCa -3'
miRNA:   3'- cCAACCGGucgcaCGACCGGG-CGCGc -5'
28797 3' -62.3 NC_006146.1 + 115363 0.66 0.631188
Target:  5'- --cUGGCCGGCGUggcggcggaGCUGgaggcccuggccGCUCGCGUGc -3'
miRNA:   3'- ccaACCGGUCGCA---------CGAC------------CGGGCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 114392 0.66 0.631188
Target:  5'- --aUGGCCGGCGacgaccccGC-GGCCCgacuGCGCGc -3'
miRNA:   3'- ccaACCGGUCGCa-------CGaCCGGG----CGCGC- -5'
28797 3' -62.3 NC_006146.1 + 141297 0.67 0.621439
Target:  5'- gGGgcGGCUGGgGgucggGCUGGCCUGC-Ca -3'
miRNA:   3'- -CCaaCCGGUCgCa----CGACCGGGCGcGc -5'
28797 3' -62.3 NC_006146.1 + 147453 0.67 0.621439
Target:  5'- gGGgcGGCUGGgGgucggGCUGGCCUGC-Ca -3'
miRNA:   3'- -CCaaCCGGUCgCa----CGACCGGGCGcGc -5'
28797 3' -62.3 NC_006146.1 + 144375 0.67 0.621439
Target:  5'- gGGgcGGCUGGgGgucggGCUGGCCUGC-Ca -3'
miRNA:   3'- -CCaaCCGGUCgCa----CGACCGGGCGcGc -5'
28797 3' -62.3 NC_006146.1 + 150531 0.67 0.621439
Target:  5'- gGGgcGGCUGGgGgucggGCUGGCCUGC-Ca -3'
miRNA:   3'- -CCaaCCGGUCgCa----CGACCGGGCGcGc -5'
28797 3' -62.3 NC_006146.1 + 15414 0.67 0.621439
Target:  5'- aGG-UGGCCucagAGgG-GCUGGCCCG-GCu -3'
miRNA:   3'- -CCaACCGG----UCgCaCGACCGGGCgCGc -5'
28797 3' -62.3 NC_006146.1 + 2478 0.67 0.621439
Target:  5'- cGGUgUGGCCGGCGggggcaggcaGCUGGCCgaCGaGCu -3'
miRNA:   3'- -CCA-ACCGGUCGCa---------CGACCGG--GCgCGc -5'
28797 3' -62.3 NC_006146.1 + 153609 0.67 0.621439
Target:  5'- gGGgcGGCUGGgGgucggGCUGGCCUGC-Ca -3'
miRNA:   3'- -CCaaCCGGUCgCa----CGACCGGGCGcGc -5'
28797 3' -62.3 NC_006146.1 + 156686 0.67 0.621439
Target:  5'- gGGgcGGCUGGgGgucggGCUGGCCUGC-Ca -3'
miRNA:   3'- -CCaaCCGGUCgCa----CGACCGGGCGcGc -5'
28797 3' -62.3 NC_006146.1 + 127563 0.67 0.611697
Target:  5'- ---gGGCU-GCGccUGCUGGCCCuGgGCGg -3'
miRNA:   3'- ccaaCCGGuCGC--ACGACCGGG-CgCGC- -5'
28797 3' -62.3 NC_006146.1 + 67592 0.67 0.60197
Target:  5'- uGGggGGCCcguGGCGU-UUGGCCUccgGUGCGa -3'
miRNA:   3'- -CCaaCCGG---UCGCAcGACCGGG---CGCGC- -5'
28797 3' -62.3 NC_006146.1 + 124169 0.67 0.592263
Target:  5'- --cUGGCCAGCGUgGCcuccGCCCGCcucggagccgccGCGg -3'
miRNA:   3'- ccaACCGGUCGCA-CGac--CGGGCG------------CGC- -5'
28797 3' -62.3 NC_006146.1 + 121143 0.67 0.592263
Target:  5'- ----aGCCGGCGUcuggGcCUGGgCCGCGCGc -3'
miRNA:   3'- ccaacCGGUCGCA----C-GACCgGGCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 33537 0.67 0.592263
Target:  5'- aGGUUGuGcCCGGCuUGcCUGGCCCugGUGCu -3'
miRNA:   3'- -CCAAC-C-GGUCGcAC-GACCGGG--CGCGc -5'
28797 3' -62.3 NC_006146.1 + 114467 0.67 0.582582
Target:  5'- --cUGGcCCAGCagGUGCUGGUgCGCGa- -3'
miRNA:   3'- ccaACC-GGUCG--CACGACCGgGCGCgc -5'
28797 3' -62.3 NC_006146.1 + 124781 0.67 0.582582
Target:  5'- ---cGGCCAGgGcccgggcaugccUGCUGcuGCUCGCGCGa -3'
miRNA:   3'- ccaaCCGGUCgC------------ACGAC--CGGGCGCGC- -5'
28797 3' -62.3 NC_006146.1 + 114138 0.67 0.582582
Target:  5'- ---aGGCCugcGCGUGCUccgcgaucaGGCCCcggacgucccGCGCGa -3'
miRNA:   3'- ccaaCCGGu--CGCACGA---------CCGGG----------CGCGC- -5'
28797 3' -62.3 NC_006146.1 + 15318 0.67 0.581615
Target:  5'- ---aGGCCAGCcccgguGUGCcccUGGCgggcgccCCGCGCGa -3'
miRNA:   3'- ccaaCCGGUCG------CACG---ACCG-------GGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.