miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28797 5' -51.8 NC_006146.1 + 155217 0.66 0.988098
Target:  5'- -cCGUGaugaAGGuguACAGGCUGUGGGu-- -3'
miRNA:   3'- gaGCGCg---UUUu--UGUCCGACACCCuaa -5'
28797 5' -51.8 NC_006146.1 + 89058 0.66 0.978377
Target:  5'- gUCGCGUugguuAAACAGGgaGgcggGGGAg- -3'
miRNA:   3'- gAGCGCGuu---UUUGUCCgaCa---CCCUaa -5'
28797 5' -51.8 NC_006146.1 + 166229 0.67 0.975877
Target:  5'- --aGUGCAAAAACAGGCUGgcaGAg- -3'
miRNA:   3'- gagCGCGUUUUUGUCCGACaccCUaa -5'
28797 5' -51.8 NC_006146.1 + 50842 0.67 0.973172
Target:  5'- cCUgGCGguGuc-CAGGCUGguggGGGAUg -3'
miRNA:   3'- -GAgCGCguUuuuGUCCGACa---CCCUAa -5'
28797 5' -51.8 NC_006146.1 + 45140 0.67 0.973172
Target:  5'- cCUUGgGCuuu-GCGGGCUggGUGGGAc- -3'
miRNA:   3'- -GAGCgCGuuuuUGUCCGA--CACCCUaa -5'
28797 5' -51.8 NC_006146.1 + 116286 0.67 0.970254
Target:  5'- -aCGCGCAccgcACGGGUgaaUGUGGGGc- -3'
miRNA:   3'- gaGCGCGUuuu-UGUCCG---ACACCCUaa -5'
28797 5' -51.8 NC_006146.1 + 132794 0.67 0.970254
Target:  5'- gCUCGCagcugcucaGCAGcuGCAGGCgg-GGGAUg -3'
miRNA:   3'- -GAGCG---------CGUUuuUGUCCGacaCCCUAa -5'
28797 5' -51.8 NC_006146.1 + 124197 0.67 0.970254
Target:  5'- --gGCGCu-GAGCAGGCagGUGGGu-- -3'
miRNA:   3'- gagCGCGuuUUUGUCCGa-CACCCuaa -5'
28797 5' -51.8 NC_006146.1 + 129258 0.67 0.967116
Target:  5'- --gGCGCGAGGGuCAGGgaUGUGGGGc- -3'
miRNA:   3'- gagCGCGUUUUU-GUCCg-ACACCCUaa -5'
28797 5' -51.8 NC_006146.1 + 138074 0.67 0.96679
Target:  5'- -cCGcCGCAAGGACGccgggccGGCUG-GGGGUUg -3'
miRNA:   3'- gaGC-GCGUUUUUGU-------CCGACaCCCUAA- -5'
28797 5' -51.8 NC_006146.1 + 34244 0.67 0.96679
Target:  5'- -cCGcCGCAAGGACGccgggccGGCUG-GGGGUUg -3'
miRNA:   3'- gaGC-GCGUUUUUGU-------CCGACaCCCUAA- -5'
28797 5' -51.8 NC_006146.1 + 140444 0.68 0.960152
Target:  5'- uCUUGUGUccuauuuuGGGACuGGCUGUGGGGg- -3'
miRNA:   3'- -GAGCGCGu-------UUUUGuCCGACACCCUaa -5'
28797 5' -51.8 NC_006146.1 + 77322 0.7 0.883385
Target:  5'- gUCGCGCAugccCAGGCUGaUGGuGAa- -3'
miRNA:   3'- gAGCGCGUuuuuGUCCGAC-ACC-CUaa -5'
28797 5' -51.8 NC_006146.1 + 99916 0.71 0.8525
Target:  5'- --gGCGCAAGAGCGGGCUccGGGu-- -3'
miRNA:   3'- gagCGCGUUUUUGUCCGAcaCCCuaa -5'
28797 5' -51.8 NC_006146.1 + 166351 0.72 0.799867
Target:  5'- uUCGCGgGAAuucGCAGccGCUGUGGGAa- -3'
miRNA:   3'- gAGCGCgUUUu--UGUC--CGACACCCUaa -5'
28797 5' -51.8 NC_006146.1 + 111043 1.06 0.009532
Target:  5'- cCUCGCGCAAAAACAGGCUGUGGGAUUg -3'
miRNA:   3'- -GAGCGCGUUUUUGUCCGACACCCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.