Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28797 | 5' | -51.8 | NC_006146.1 | + | 166351 | 0.72 | 0.799867 |
Target: 5'- uUCGCGgGAAuucGCAGccGCUGUGGGAa- -3' miRNA: 3'- gAGCGCgUUUu--UGUC--CGACACCCUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 166229 | 0.67 | 0.975877 |
Target: 5'- --aGUGCAAAAACAGGCUGgcaGAg- -3' miRNA: 3'- gagCGCGUUUUUGUCCGACaccCUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 155217 | 0.66 | 0.988098 |
Target: 5'- -cCGUGaugaAGGuguACAGGCUGUGGGu-- -3' miRNA: 3'- gaGCGCg---UUUu--UGUCCGACACCCuaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 140444 | 0.68 | 0.960152 |
Target: 5'- uCUUGUGUccuauuuuGGGACuGGCUGUGGGGg- -3' miRNA: 3'- -GAGCGCGu-------UUUUGuCCGACACCCUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 138074 | 0.67 | 0.96679 |
Target: 5'- -cCGcCGCAAGGACGccgggccGGCUG-GGGGUUg -3' miRNA: 3'- gaGC-GCGUUUUUGU-------CCGACaCCCUAA- -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 132794 | 0.67 | 0.970254 |
Target: 5'- gCUCGCagcugcucaGCAGcuGCAGGCgg-GGGAUg -3' miRNA: 3'- -GAGCG---------CGUUuuUGUCCGacaCCCUAa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 129258 | 0.67 | 0.967116 |
Target: 5'- --gGCGCGAGGGuCAGGgaUGUGGGGc- -3' miRNA: 3'- gagCGCGUUUUU-GUCCg-ACACCCUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 124197 | 0.67 | 0.970254 |
Target: 5'- --gGCGCu-GAGCAGGCagGUGGGu-- -3' miRNA: 3'- gagCGCGuuUUUGUCCGa-CACCCuaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 116286 | 0.67 | 0.970254 |
Target: 5'- -aCGCGCAccgcACGGGUgaaUGUGGGGc- -3' miRNA: 3'- gaGCGCGUuuu-UGUCCG---ACACCCUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 111043 | 1.06 | 0.009532 |
Target: 5'- cCUCGCGCAAAAACAGGCUGUGGGAUUg -3' miRNA: 3'- -GAGCGCGUUUUUGUCCGACACCCUAA- -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 99916 | 0.71 | 0.8525 |
Target: 5'- --gGCGCAAGAGCGGGCUccGGGu-- -3' miRNA: 3'- gagCGCGUUUUUGUCCGAcaCCCuaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 89058 | 0.66 | 0.978377 |
Target: 5'- gUCGCGUugguuAAACAGGgaGgcggGGGAg- -3' miRNA: 3'- gAGCGCGuu---UUUGUCCgaCa---CCCUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 77322 | 0.7 | 0.883385 |
Target: 5'- gUCGCGCAugccCAGGCUGaUGGuGAa- -3' miRNA: 3'- gAGCGCGUuuuuGUCCGAC-ACC-CUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 50842 | 0.67 | 0.973172 |
Target: 5'- cCUgGCGguGuc-CAGGCUGguggGGGAUg -3' miRNA: 3'- -GAgCGCguUuuuGUCCGACa---CCCUAa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 45140 | 0.67 | 0.973172 |
Target: 5'- cCUUGgGCuuu-GCGGGCUggGUGGGAc- -3' miRNA: 3'- -GAGCgCGuuuuUGUCCGA--CACCCUaa -5' |
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28797 | 5' | -51.8 | NC_006146.1 | + | 34244 | 0.67 | 0.96679 |
Target: 5'- -cCGcCGCAAGGACGccgggccGGCUG-GGGGUUg -3' miRNA: 3'- gaGC-GCGUUUUUGU-------CCGACaCCCUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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