miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28798 3' -48.6 NC_006146.1 + 118899 0.66 0.999472
Target:  5'- uGCCUCAGguucGAGAGCAGguuggCgUCcACCgUCa -3'
miRNA:   3'- -CGGAGUUa---CUUUCGUCa----G-AGaUGG-AG- -5'
28798 3' -48.6 NC_006146.1 + 20021 0.66 0.999435
Target:  5'- gGCC-CGGUGuGccagcgucccccgcAGCcgcccAGUCUCUGCCUCc -3'
miRNA:   3'- -CGGaGUUACuU--------------UCG-----UCAGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 26177 0.66 0.999435
Target:  5'- gGCC-CGGUGuGccagcgucccccgcAGCcgcccAGUCUCUGCCUCc -3'
miRNA:   3'- -CGGaGUUACuU--------------UCG-----UCAGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 23099 0.66 0.999435
Target:  5'- gGCC-CGGUGuGccagcgucccccgcAGCcgcccAGUCUCUGCCUCc -3'
miRNA:   3'- -CGGaGUUACuU--------------UCG-----UCAGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 13866 0.66 0.999435
Target:  5'- gGCC-CGGUGuGccagcgucccccgcAGCcgcccAGUCUCUGCCUCc -3'
miRNA:   3'- -CGGaGUUACuU--------------UCG-----UCAGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 29255 0.66 0.999435
Target:  5'- gGCC-CGGUGuGccagcgucccccgcAGCcgcccAGUCUCUGCCUCc -3'
miRNA:   3'- -CGGaGUUACuU--------------UCG-----UCAGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 42796 0.66 0.999284
Target:  5'- cGCCUCGGccagGuuGGCGGUCUCgcagagcguguagACCa- -3'
miRNA:   3'- -CGGAGUUa---CuuUCGUCAGAGa------------UGGag -5'
28798 3' -48.6 NC_006146.1 + 159256 0.66 0.999187
Target:  5'- cCCgCAAUGAGgauccuggGGUcguuGGUCUUUGCCUCu -3'
miRNA:   3'- cGGaGUUACUU--------UCG----UCAGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 96714 0.66 0.999187
Target:  5'- uGCCUCAcgGAccagaucaacGAGCAGUUUg-ACCa- -3'
miRNA:   3'- -CGGAGUuaCU----------UUCGUCAGAgaUGGag -5'
28798 3' -48.6 NC_006146.1 + 16944 0.66 0.998939
Target:  5'- gGCC-CGGUGugccagcguccccccAGCcgcccAGUCUCUGCCUCc -3'
miRNA:   3'- -CGGaGUUACuu-------------UCG-----UCAGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 21411 0.66 0.998756
Target:  5'- aCCUCAGaGAGGGCaggguccccauggGGgagCUCUGCUUCu -3'
miRNA:   3'- cGGAGUUaCUUUCG-------------UCa--GAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 24796 0.67 0.998629
Target:  5'- aGCUUC-GUGAGGGgGGuguggaaauacgagaUCUUUGCCUCg -3'
miRNA:   3'- -CGGAGuUACUUUCgUC---------------AGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 46288 0.67 0.998491
Target:  5'- aGCCcCGGUGgcGGCGGUCgagcucgagccccUCUuCCUCu -3'
miRNA:   3'- -CGGaGUUACuuUCGUCAG-------------AGAuGGAG- -5'
28798 3' -48.6 NC_006146.1 + 126511 0.67 0.998003
Target:  5'- uGUCUCuccaaaAGUGGGAGCAgguagccuccuuuuuGUCUCUGCCc- -3'
miRNA:   3'- -CGGAG------UUACUUUCGU---------------CAGAGAUGGag -5'
28798 3' -48.6 NC_006146.1 + 4535 0.67 0.997853
Target:  5'- aUCUCGGUGccGGCAGcCgccgaCUACCUCc -3'
miRNA:   3'- cGGAGUUACuuUCGUCaGa----GAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 80732 0.67 0.997853
Target:  5'- aCCUCcccUGcc-GCGGcCUCUACCUCg -3'
miRNA:   3'- cGGAGuu-ACuuuCGUCaGAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 115695 0.67 0.996952
Target:  5'- gGUgUCGAUGGAGGCcaUCUCgugaugcACCUCa -3'
miRNA:   3'- -CGgAGUUACUUUCGucAGAGa------UGGAG- -5'
28798 3' -48.6 NC_006146.1 + 92753 0.68 0.996023
Target:  5'- -aCUaCAGUGAGAGCgacgaggaaggugaaGGggcCUCUGCCUCu -3'
miRNA:   3'- cgGA-GUUACUUUCG---------------UCa--GAGAUGGAG- -5'
28798 3' -48.6 NC_006146.1 + 45930 0.68 0.994208
Target:  5'- uGCCguaGGUGGAcGgGGUCUCUcuggggACCUCg -3'
miRNA:   3'- -CGGag-UUACUUuCgUCAGAGA------UGGAG- -5'
28798 3' -48.6 NC_006146.1 + 65748 0.69 0.986001
Target:  5'- gGCCUCuuaccugcGGCGGUCUCguuagaggagGCCUCg -3'
miRNA:   3'- -CGGAGuuacuu--UCGUCAGAGa---------UGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.