miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28798 5' -53.2 NC_006146.1 + 33727 0.65 0.9845
Target:  5'- cCGuucuGgAGCUCCuccgguccggugggUGuGGUCCGCUGGGu -3'
miRNA:   3'- cGCuu--UgUCGAGG--------------AC-CUAGGUGACCC- -5'
28798 5' -53.2 NC_006146.1 + 56214 0.66 0.983195
Target:  5'- cGCGGAcgagccGCgAGCcgUCCagcGGGUCCGCgGGGg -3'
miRNA:   3'- -CGCUU------UG-UCG--AGGa--CCUAGGUGaCCC- -5'
28798 5' -53.2 NC_006146.1 + 60491 0.66 0.981191
Target:  5'- cGgGggGcCAGCUCCcccgacggcgaGGGUgcucCCACUGGGc -3'
miRNA:   3'- -CgCuuU-GUCGAGGa----------CCUA----GGUGACCC- -5'
28798 5' -53.2 NC_006146.1 + 152261 0.66 0.981191
Target:  5'- uGCGAucccuGGCUgCCUGGAgugcUCUGCUGGc -3'
miRNA:   3'- -CGCUuug--UCGA-GGACCU----AGGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 49499 0.66 0.981191
Target:  5'- -aGggGCGGCguggcaUCUGGAUCgGC-GGGu -3'
miRNA:   3'- cgCuuUGUCGa-----GGACCUAGgUGaCCC- -5'
28798 5' -53.2 NC_006146.1 + 76779 0.66 0.981191
Target:  5'- aCGucuACAGCuUCCUGGcccggcucAUCUACgGGGg -3'
miRNA:   3'- cGCuu-UGUCG-AGGACC--------UAGGUGaCCC- -5'
28798 5' -53.2 NC_006146.1 + 143802 0.66 0.981191
Target:  5'- -aGAAAUAGUUgCUGGG-CCACUuuauaccaGGGg -3'
miRNA:   3'- cgCUUUGUCGAgGACCUaGGUGA--------CCC- -5'
28798 5' -53.2 NC_006146.1 + 144283 0.66 0.981191
Target:  5'- ---uAGgGGCUCCUGGGgggaACUGGGc -3'
miRNA:   3'- cgcuUUgUCGAGGACCUagg-UGACCC- -5'
28798 5' -53.2 NC_006146.1 + 146880 0.66 0.981191
Target:  5'- -aGAAAUAGUUgCUGGG-CCACUuuauaccaGGGg -3'
miRNA:   3'- cgCUUUGUCGAgGACCUaGGUGA--------CCC- -5'
28798 5' -53.2 NC_006146.1 + 147361 0.66 0.981191
Target:  5'- ---uAGgGGCUCCUGGGgggaACUGGGc -3'
miRNA:   3'- cgcuUUgUCGAGGACCUagg-UGACCC- -5'
28798 5' -53.2 NC_006146.1 + 149958 0.66 0.981191
Target:  5'- -aGAAAUAGUUgCUGGG-CCACUuuauaccaGGGg -3'
miRNA:   3'- cgCUUUGUCGAgGACCUaGGUGA--------CCC- -5'
28798 5' -53.2 NC_006146.1 + 150439 0.66 0.981191
Target:  5'- ---uAGgGGCUCCUGGGgggaACUGGGc -3'
miRNA:   3'- cgcuUUgUCGAGGACCUagg-UGACCC- -5'
28798 5' -53.2 NC_006146.1 + 153036 0.66 0.981191
Target:  5'- -aGAAAUAGUUgCUGGG-CCACUuuauaccaGGGg -3'
miRNA:   3'- cgCUUUGUCGAgGACCUaGGUGA--------CCC- -5'
28798 5' -53.2 NC_006146.1 + 153517 0.66 0.981191
Target:  5'- ---uAGgGGCUCCUGGGgggaACUGGGc -3'
miRNA:   3'- cgcuUUgUCGAGGACCUagg-UGACCC- -5'
28798 5' -53.2 NC_006146.1 + 156114 0.66 0.981191
Target:  5'- -aGAAAUAGUUgCUGGG-CCACUuuauaccaGGGg -3'
miRNA:   3'- cgCUUUGUCGAgGACCUaGGUGA--------CCC- -5'
28798 5' -53.2 NC_006146.1 + 156595 0.66 0.981191
Target:  5'- ---uAGgGGCUCCUGGGgggaACUGGGc -3'
miRNA:   3'- cgcuUUgUCGAGGACCUagg-UGACCC- -5'
28798 5' -53.2 NC_006146.1 + 41969 0.66 0.981191
Target:  5'- cGUGAGuguGCUCuaCUGccucGUCCACUGGGg -3'
miRNA:   3'- -CGCUUuguCGAG--GACc---UAGGUGACCC- -5'
28798 5' -53.2 NC_006146.1 + 166831 0.66 0.981191
Target:  5'- uCGAcGCGGC-CC-GGGUCCGCgUGGa -3'
miRNA:   3'- cGCUuUGUCGaGGaCCUAGGUG-ACCc -5'
28798 5' -53.2 NC_006146.1 + 67126 0.66 0.979012
Target:  5'- cGCGAAAUGGCagaggaagaCCgGGAgCCGCUGGc -3'
miRNA:   3'- -CGCUUUGUCGa--------GGaCCUaGGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 38145 0.66 0.977618
Target:  5'- uGCGGGaccGCGGCaUCCggccccggagaaccGGggCUACUGGGg -3'
miRNA:   3'- -CGCUU---UGUCG-AGGa-------------CCuaGGUGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.