miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28798 5' -53.2 NC_006146.1 + 109997 1.12 0.004189
Target:  5'- uGCGAAACAGCUCCUGGAUCCACUGGGc -3'
miRNA:   3'- -CGCUUUGUCGAGGACCUAGGUGACCC- -5'
28798 5' -53.2 NC_006146.1 + 55268 0.78 0.504158
Target:  5'- gGCGAAGCGGCUCgUGGGgcUCgCGgUGGGc -3'
miRNA:   3'- -CGCUUUGUCGAGgACCU--AG-GUgACCC- -5'
28798 5' -53.2 NC_006146.1 + 92084 0.76 0.604615
Target:  5'- uGgGggGCGGCccggCCUGGGgcugCUGCUGGGg -3'
miRNA:   3'- -CgCuuUGUCGa---GGACCUa---GGUGACCC- -5'
28798 5' -53.2 NC_006146.1 + 13842 0.75 0.635459
Target:  5'- gGCG-GACAGCgUCCUGGAaaCACUGGc -3'
miRNA:   3'- -CGCuUUGUCG-AGGACCUagGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 74384 0.75 0.635459
Target:  5'- gGUucAGCAGCUCCUucuugGGGUCCuugcGCUGGGa -3'
miRNA:   3'- -CGcuUUGUCGAGGA-----CCUAGG----UGACCC- -5'
28798 5' -53.2 NC_006146.1 + 102796 0.75 0.645746
Target:  5'- cGCGGAcCGGCUggccgcccaCCUGGAUCgCGCgGGGg -3'
miRNA:   3'- -CGCUUuGUCGA---------GGACCUAG-GUGaCCC- -5'
28798 5' -53.2 NC_006146.1 + 27604 0.75 0.656022
Target:  5'- --aAGACAGaCUCUccGGGUCCACUGGGu -3'
miRNA:   3'- cgcUUUGUC-GAGGa-CCUAGGUGACCC- -5'
28798 5' -53.2 NC_006146.1 + 67184 0.74 0.666278
Target:  5'- -aGGAACuGCUCCuUGGGauUCCACUGGc -3'
miRNA:   3'- cgCUUUGuCGAGG-ACCU--AGGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 104690 0.74 0.676506
Target:  5'- -aGggGCAGCUgggCCUGGAUCUcgucgcCUGGGu -3'
miRNA:   3'- cgCuuUGUCGA---GGACCUAGGu-----GACCC- -5'
28798 5' -53.2 NC_006146.1 + 71467 0.74 0.676506
Target:  5'- aGCGAGGgccuCAuGCUCCUGGAUCUgaACUuGGGc -3'
miRNA:   3'- -CGCUUU----GU-CGAGGACCUAGG--UGA-CCC- -5'
28798 5' -53.2 NC_006146.1 + 137605 0.74 0.706935
Target:  5'- -gGggGCcggguGCcCCUGGGUCCGCUGGu -3'
miRNA:   3'- cgCuuUGu----CGaGGACCUAGGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 28422 0.74 0.716963
Target:  5'- -gGAGGCGGCUCCgGGucacUCCAC-GGGa -3'
miRNA:   3'- cgCUUUGUCGAGGaCCu---AGGUGaCCC- -5'
28798 5' -53.2 NC_006146.1 + 45315 0.73 0.756246
Target:  5'- cCGGAgaACAGCUCCUGGAcgUUGCgGGGa -3'
miRNA:   3'- cGCUU--UGUCGAGGACCUa-GGUGaCCC- -5'
28798 5' -53.2 NC_006146.1 + 80078 0.72 0.77526
Target:  5'- cGCGGucccagcACAGCgCCUGGGUggcgaCACUGGGu -3'
miRNA:   3'- -CGCUu------UGUCGaGGACCUAg----GUGACCC- -5'
28798 5' -53.2 NC_006146.1 + 47273 0.72 0.783652
Target:  5'- aGCGAgaccggcGACGGCUgCgUGGAccUCCGCUGGc -3'
miRNA:   3'- -CGCU-------UUGUCGA-GgACCU--AGGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 146026 0.72 0.793757
Target:  5'- aGgGggGCAGCUCCUGGcacugcgcGUCCAgCUGc- -3'
miRNA:   3'- -CgCuuUGUCGAGGACC--------UAGGU-GACcc -5'
28798 5' -53.2 NC_006146.1 + 92650 0.72 0.811664
Target:  5'- -gGGAGCAGCUCUUGuGG-CCAUUGGa -3'
miRNA:   3'- cgCUUUGUCGAGGAC-CUaGGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 19591 0.72 0.811664
Target:  5'- cGCGAgGACAGCUCCUGGcccUCCuacacggccCUGGc -3'
miRNA:   3'- -CGCU-UUGUCGAGGACCu--AGGu--------GACCc -5'
28798 5' -53.2 NC_006146.1 + 33965 0.71 0.820375
Target:  5'- cCGGGugGGCguggUCCgcUGGGUCCGCUGGu -3'
miRNA:   3'- cGCUUugUCG----AGG--ACCUAGGUGACCc -5'
28798 5' -53.2 NC_006146.1 + 94954 0.71 0.829757
Target:  5'- cGUGAAGCGGUUCUUGGucugguauaaagacCCACUGGc -3'
miRNA:   3'- -CGCUUUGUCGAGGACCua------------GGUGACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.