miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28799 3' -56.7 NC_006146.1 + 167346 0.66 0.901223
Target:  5'- uCACgCUC--GGCUGcacgcgcggCGGCgCCGGCCGg -3'
miRNA:   3'- -GUG-GAGuuUCGACua-------GUCG-GGCCGGC- -5'
28799 3' -56.7 NC_006146.1 + 168278 0.66 0.901223
Target:  5'- uCACgCUC--GGCUGcacgcgcggCGGCgCCGGCCGg -3'
miRNA:   3'- -GUG-GAGuuUCGACua-------GUCG-GGCCGGC- -5'
28799 3' -56.7 NC_006146.1 + 169210 0.66 0.901223
Target:  5'- uCACgCUC--GGCUGcacgcgcggCGGCgCCGGCCGg -3'
miRNA:   3'- -GUG-GAGuuUCGACua-------GUCG-GGCCGGC- -5'
28799 3' -56.7 NC_006146.1 + 170141 0.66 0.901223
Target:  5'- uCACgCUC--GGCUGcacgcgcggCGGCgCCGGCCGg -3'
miRNA:   3'- -GUG-GAGuuUCGACua-------GUCG-GGCCGGC- -5'
28799 3' -56.7 NC_006146.1 + 18641 0.66 0.901223
Target:  5'- aGCaCUCcAGGCagccaggGAUCGcauGCCCGGCCu -3'
miRNA:   3'- gUG-GAGuUUCGa------CUAGU---CGGGCCGGc -5'
28799 3' -56.7 NC_006146.1 + 60072 0.66 0.90059
Target:  5'- cCGCCUCGucccgugGAGCUacGggCAaucGCCgGGCCGg -3'
miRNA:   3'- -GUGGAGU-------UUCGA--CuaGU---CGGgCCGGC- -5'
28799 3' -56.7 NC_006146.1 + 119980 0.66 0.90059
Target:  5'- aCGCCUCGGAGacacaucUUGGgcacggaGGCCCaGGCCGc -3'
miRNA:   3'- -GUGGAGUUUC-------GACUag-----UCGGG-CCGGC- -5'
28799 3' -56.7 NC_006146.1 + 3300 0.66 0.894786
Target:  5'- cCGCCccCGAGGCccccaGGggaGGCCCGGCCu -3'
miRNA:   3'- -GUGGa-GUUUCGa----CUag-UCGGGCCGGc -5'
28799 3' -56.7 NC_006146.1 + 94171 0.66 0.894786
Target:  5'- gGCCUCcacGAAGCUG-UCGGCCuCGaGCg- -3'
miRNA:   3'- gUGGAG---UUUCGACuAGUCGG-GC-CGgc -5'
28799 3' -56.7 NC_006146.1 + 505 0.66 0.894786
Target:  5'- cCGCCccCGAGGCccccaGGggaGGCCCGGCCu -3'
miRNA:   3'- -GUGGa-GUUUCGa----CUag-UCGGGCCGGc -5'
28799 3' -56.7 NC_006146.1 + 1436 0.66 0.894786
Target:  5'- cCGCCccCGAGGCccccaGGggaGGCCCGGCCu -3'
miRNA:   3'- -GUGGa-GUUUCGa----CUag-UCGGGCCGGc -5'
28799 3' -56.7 NC_006146.1 + 2368 0.66 0.894786
Target:  5'- cCGCCccCGAGGCccccaGGggaGGCCCGGCCu -3'
miRNA:   3'- -GUGGa-GUUUCGa----CUag-UCGGGCCGGc -5'
28799 3' -56.7 NC_006146.1 + 167162 0.66 0.888122
Target:  5'- cCACC-CcGGGCUGAagGGCCacgCGGCCc -3'
miRNA:   3'- -GUGGaGuUUCGACUagUCGG---GCCGGc -5'
28799 3' -56.7 NC_006146.1 + 61594 0.66 0.888122
Target:  5'- aGCC----GGCUGcagCGGCCgCGGCCGg -3'
miRNA:   3'- gUGGaguuUCGACua-GUCGG-GCCGGC- -5'
28799 3' -56.7 NC_006146.1 + 126499 0.66 0.888122
Target:  5'- -cCCUCGAGGaagGcgCcguGCCCGGCCc -3'
miRNA:   3'- guGGAGUUUCga-CuaGu--CGGGCCGGc -5'
28799 3' -56.7 NC_006146.1 + 148145 0.66 0.888122
Target:  5'- gGCUUCGu-GCUGGUCagGGCCCgGGUCu -3'
miRNA:   3'- gUGGAGUuuCGACUAG--UCGGG-CCGGc -5'
28799 3' -56.7 NC_006146.1 + 114800 0.66 0.886079
Target:  5'- uCGCCUUcguggaGGAGCUGGUggccgacaccuacuUGGCCCGGUgGg -3'
miRNA:   3'- -GUGGAG------UUUCGACUA--------------GUCGGGCCGgC- -5'
28799 3' -56.7 NC_006146.1 + 68857 0.66 0.881235
Target:  5'- uGCUggCAAgcaGGCUGGcgaCAGCCUGGCCc -3'
miRNA:   3'- gUGGa-GUU---UCGACUa--GUCGGGCCGGc -5'
28799 3' -56.7 NC_006146.1 + 21199 0.66 0.881235
Target:  5'- gACCUUgaugaaggggguGGAGCUGGUCAGgaaaaCGGCCu -3'
miRNA:   3'- gUGGAG------------UUUCGACUAGUCgg---GCCGGc -5'
28799 3' -56.7 NC_006146.1 + 167517 0.66 0.881235
Target:  5'- aCGCUUCAGGGcCUGuaggacGCCgCGGCCGu -3'
miRNA:   3'- -GUGGAGUUUC-GACuagu--CGG-GCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.