miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28799 5' -60.5 NC_006146.1 + 157809 0.66 0.747491
Target:  5'- gGGCCAgguccgaguacuccuCCGC-GCUGGCCccggagGGGACGGg -3'
miRNA:   3'- -CCGGU---------------GGCGuCGGUCGGa-----CCCUGUUg -5'
28799 5' -60.5 NC_006146.1 + 123555 0.66 0.744668
Target:  5'- uGGCC-CCGUAGCacguGCCgaggaugucuuccaGGACAACa -3'
miRNA:   3'- -CCGGuGGCGUCGgu--CGGac------------CCUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 50110 0.66 0.743725
Target:  5'- cGGCCA-CGCGGaCCGgcgaccuccGCCaGGGACAu- -3'
miRNA:   3'- -CCGGUgGCGUC-GGU---------CGGaCCCUGUug -5'
28799 5' -60.5 NC_006146.1 + 19983 0.66 0.743725
Target:  5'- -cCCACCGgguccaucaGGCCGGCCggaGGGACcccGGCg -3'
miRNA:   3'- ccGGUGGCg--------UCGGUCGGa--CCCUG---UUG- -5'
28799 5' -60.5 NC_006146.1 + 16906 0.66 0.743725
Target:  5'- -cCCACCGgguccaucaGGCCGGCCggaGGGACcccGGCg -3'
miRNA:   3'- ccGGUGGCg--------UCGGUCGGa--CCCUG---UUG- -5'
28799 5' -60.5 NC_006146.1 + 13828 0.66 0.743725
Target:  5'- -cCCACCGgguccaucaGGCCGGCCggaGGGACcccGGCg -3'
miRNA:   3'- ccGGUGGCg--------UCGGUCGGa--CCCUG---UUG- -5'
28799 5' -60.5 NC_006146.1 + 62217 0.66 0.743725
Target:  5'- aGCCcugcGCCGCAGCC--UCUGGGcGCAGa -3'
miRNA:   3'- cCGG----UGGCGUCGGucGGACCC-UGUUg -5'
28799 5' -60.5 NC_006146.1 + 23061 0.66 0.743725
Target:  5'- -cCCACCGgguccaucaGGCCGGCCggaGGGACcccGGCg -3'
miRNA:   3'- ccGGUGGCg--------UCGGUCGGa--CCCUG---UUG- -5'
28799 5' -60.5 NC_006146.1 + 29217 0.66 0.743725
Target:  5'- -cCCACCGgguccaucaGGCCGGCCggaGGGACcccGGCg -3'
miRNA:   3'- ccGGUGGCg--------UCGGUCGGa--CCCUG---UUG- -5'
28799 5' -60.5 NC_006146.1 + 26139 0.66 0.743725
Target:  5'- -cCCACCGgguccaucaGGCCGGCCggaGGGACcccGGCg -3'
miRNA:   3'- ccGGUGGCg--------UCGGUCGGa--CCCUG---UUG- -5'
28799 5' -60.5 NC_006146.1 + 39070 0.66 0.743725
Target:  5'- uGGUCGCCgGCcuCCGGUCUGGGGa--- -3'
miRNA:   3'- -CCGGUGG-CGucGGUCGGACCCUguug -5'
28799 5' -60.5 NC_006146.1 + 68851 0.66 0.743725
Target:  5'- aGGCC-CUGCuGGCaagCAGgCUGGcGACAGCc -3'
miRNA:   3'- -CCGGuGGCG-UCG---GUCgGACC-CUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 129684 0.66 0.743725
Target:  5'- uGGCCACgCGC-GCCcaguGCCcgcggaUGGGGCGc- -3'
miRNA:   3'- -CCGGUG-GCGuCGGu---CGG------ACCCUGUug -5'
28799 5' -60.5 NC_006146.1 + 96628 0.66 0.743725
Target:  5'- uGGUgGaCCGCaaccggcucuuuGGCCAGCCcggGGaGACGGCc -3'
miRNA:   3'- -CCGgU-GGCG------------UCGGUCGGa--CC-CUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 131069 0.66 0.743725
Target:  5'- cGGcCCACUguGCGGCCgaGGCCgccGGGccguCAACg -3'
miRNA:   3'- -CC-GGUGG--CGUCGG--UCGGa--CCCu---GUUG- -5'
28799 5' -60.5 NC_006146.1 + 51417 0.66 0.743725
Target:  5'- uGCgACCGCAGgUGGCUaguaaaccgacgUGGGACcACg -3'
miRNA:   3'- cCGgUGGCGUCgGUCGG------------ACCCUGuUG- -5'
28799 5' -60.5 NC_006146.1 + 42633 0.66 0.743725
Target:  5'- cGGCCGCCGCcGUgGGCCUcacguaguGGGccCAGa -3'
miRNA:   3'- -CCGGUGGCGuCGgUCGGA--------CCCu-GUUg -5'
28799 5' -60.5 NC_006146.1 + 42792 0.66 0.743725
Target:  5'- uGGCCGCCuCGGCCAGgUUGGcGGu--- -3'
miRNA:   3'- -CCGGUGGcGUCGGUCgGACC-CUguug -5'
28799 5' -60.5 NC_006146.1 + 115984 0.66 0.743725
Target:  5'- aGGCCuACUGCcggucccugaaGGCCGGCCa--GACGGCg -3'
miRNA:   3'- -CCGG-UGGCG-----------UCGGUCGGaccCUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 106643 0.66 0.743725
Target:  5'- cGCCuGCUGCGGCCGGCUggucaGGGcCGu- -3'
miRNA:   3'- cCGG-UGGCGUCGGUCGGa----CCCuGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.