miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28799 5' -60.5 NC_006146.1 + 157809 0.66 0.747491
Target:  5'- gGGCCAgguccgaguacuccuCCGC-GCUGGCCccggagGGGACGGg -3'
miRNA:   3'- -CCGGU---------------GGCGuCGGUCGGa-----CCCUGUUg -5'
28799 5' -60.5 NC_006146.1 + 36212 0.66 0.733293
Target:  5'- gGGCUccccgggAgCGCaAGCCGGCCgGGGAgGAg -3'
miRNA:   3'- -CCGG-------UgGCG-UCGGUCGGaCCCUgUUg -5'
28799 5' -60.5 NC_006146.1 + 102038 0.66 0.724684
Target:  5'- gGGCCagGCUGUcGCCAGCCUGcuuGucCAGCa -3'
miRNA:   3'- -CCGG--UGGCGuCGGUCGGAC---CcuGUUG- -5'
28799 5' -60.5 NC_006146.1 + 161437 0.66 0.715046
Target:  5'- uGGCC-CCGCGGgaacCCAaggcGCgUGGGGCGGg -3'
miRNA:   3'- -CCGGuGGCGUC----GGU----CGgACCCUGUUg -5'
28799 5' -60.5 NC_006146.1 + 10734 0.66 0.715046
Target:  5'- gGGCaGCCagAGCCAGCCgGGGccauGCGGCu -3'
miRNA:   3'- -CCGgUGGcgUCGGUCGGaCCC----UGUUG- -5'
28799 5' -60.5 NC_006146.1 + 11527 0.66 0.70923
Target:  5'- cGGCCugCgagcugGCGGUCAGCuacgcccccgccaugCUGGaGGCGGCg -3'
miRNA:   3'- -CCGGugG------CGUCGGUCG---------------GACC-CUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 120472 0.66 0.705341
Target:  5'- uGGCCGCgaagcuUGCGGCCuGCCUGccgucccuGGCGGCc -3'
miRNA:   3'- -CCGGUG------GCGUCGGuCGGACc-------CUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 40029 0.66 0.705341
Target:  5'- gGGCCugcuggggGCCGUAGCCgacuccGGCgUGuccguaGGACAGCg -3'
miRNA:   3'- -CCGG--------UGGCGUCGG------UCGgAC------CCUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 15998 0.66 0.705341
Target:  5'- gGGCgGaCGCGGUCAGCCcGGG-CGAg -3'
miRNA:   3'- -CCGgUgGCGUCGGUCGGaCCCuGUUg -5'
28799 5' -60.5 NC_006146.1 + 56683 0.66 0.734246
Target:  5'- gGGCCcCCuGgGGCUGGcCCUGcuGGACAACc -3'
miRNA:   3'- -CCGGuGG-CgUCGGUC-GGAC--CCUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 60467 0.66 0.734246
Target:  5'- aGGCCGCggggaGCGGUgagaGGCCgggGGGcCAGCu -3'
miRNA:   3'- -CCGGUGg----CGUCGg---UCGGa--CCCuGUUG- -5'
28799 5' -60.5 NC_006146.1 + 71585 0.66 0.734246
Target:  5'- cGGCUuCCGCAGCaGGUCUGGcccuGACcaGGCg -3'
miRNA:   3'- -CCGGuGGCGUCGgUCGGACC----CUG--UUG- -5'
28799 5' -60.5 NC_006146.1 + 106643 0.66 0.743725
Target:  5'- cGCCuGCUGCGGCCGGCUggucaGGGcCGu- -3'
miRNA:   3'- cCGG-UGGCGUCGGUCGGa----CCCuGUug -5'
28799 5' -60.5 NC_006146.1 + 115984 0.66 0.743725
Target:  5'- aGGCCuACUGCcggucccugaaGGCCGGCCa--GACGGCg -3'
miRNA:   3'- -CCGG-UGGCG-----------UCGGUCGGaccCUGUUG- -5'
28799 5' -60.5 NC_006146.1 + 42792 0.66 0.743725
Target:  5'- uGGCCGCCuCGGCCAGgUUGGcGGu--- -3'
miRNA:   3'- -CCGGUGGcGUCGGUCgGACC-CUguug -5'
28799 5' -60.5 NC_006146.1 + 42633 0.66 0.743725
Target:  5'- cGGCCGCCGCcGUgGGCCUcacguaguGGGccCAGa -3'
miRNA:   3'- -CCGGUGGCGuCGgUCGGA--------CCCu-GUUg -5'
28799 5' -60.5 NC_006146.1 + 51417 0.66 0.743725
Target:  5'- uGCgACCGCAGgUGGCUaguaaaccgacgUGGGACcACg -3'
miRNA:   3'- cCGgUGGCGUCgGUCGG------------ACCCUGuUG- -5'
28799 5' -60.5 NC_006146.1 + 35780 0.66 0.742781
Target:  5'- cGGCCACCccccGCCGGagcaaacccaaacCCUGGGAaAGCg -3'
miRNA:   3'- -CCGGUGGcgu-CGGUC-------------GGACCCUgUUG- -5'
28799 5' -60.5 NC_006146.1 + 23117 0.66 0.742781
Target:  5'- uGCCGCUGCucuuccugggagaGGCCgggAGCCUGGG-CuuCg -3'
miRNA:   3'- cCGGUGGCG-------------UCGG---UCGGACCCuGuuG- -5'
28799 5' -60.5 NC_006146.1 + 131704 0.66 0.734246
Target:  5'- aGGCCgacuACUGCGGCCuGCUgauGGGCAc- -3'
miRNA:   3'- -CCGG----UGGCGUCGGuCGGac-CCUGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.