miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2880 3' -59.2 NC_001493.1 + 93450 0.66 0.743868
Target:  5'- cGCGgUCCAuuCGUauauuaUCCGUGGGGGGUu -3'
miRNA:   3'- -CGCgAGGU--GCAgg----AGGCGCCUCCUAu -5'
2880 3' -59.2 NC_001493.1 + 29310 0.67 0.714766
Target:  5'- aUGCUCUACGggCCgaaCGCGGGGGc-- -3'
miRNA:   3'- cGCGAGGUGCa-GGag-GCGCCUCCuau -5'
2880 3' -59.2 NC_001493.1 + 125502 0.67 0.714766
Target:  5'- -aGCUCgACGUCC-CCGCGGuucGAg- -3'
miRNA:   3'- cgCGAGgUGCAGGaGGCGCCuc-CUau -5'
2880 3' -59.2 NC_001493.1 + 9948 0.67 0.714766
Target:  5'- -aGCUCgACGUCC-CCGCGGuucGAg- -3'
miRNA:   3'- cgCGAGgUGCAGGaGGCGCCuc-CUau -5'
2880 3' -59.2 NC_001493.1 + 91761 0.67 0.675044
Target:  5'- uGCGC-CCGCGaCCg--GCGGAGGAc- -3'
miRNA:   3'- -CGCGaGGUGCaGGaggCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 123823 0.68 0.644863
Target:  5'- gGCuCUCCGgGUCCUCUcucuCGGGGGAg- -3'
miRNA:   3'- -CGcGAGGUgCAGGAGGc---GCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 8269 0.68 0.644863
Target:  5'- gGCuCUCCGgGUCCUCUcucuCGGGGGAg- -3'
miRNA:   3'- -CGcGAGGUgCAGGAGGc---GCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 87673 0.68 0.624681
Target:  5'- -gGCUCCuCGUacgCCGCGGGGGGc- -3'
miRNA:   3'- cgCGAGGuGCAggaGGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 87727 0.68 0.624681
Target:  5'- -gGCUCCuCGUacgCCGCGGGGGGc- -3'
miRNA:   3'- cgCGAGGuGCAggaGGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 87906 0.68 0.624681
Target:  5'- -gGCUCCuCGUacgCCGCGGGGGGc- -3'
miRNA:   3'- cgCGAGGuGCAggaGGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 87864 0.68 0.60452
Target:  5'- -aGCUCCuCGUacgCCGCGGGGGGc- -3'
miRNA:   3'- cgCGAGGuGCAggaGGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 126346 0.69 0.544726
Target:  5'- gGCGCgucCCGagaGUCUcgaCCGCGGAGGAc- -3'
miRNA:   3'- -CGCGa--GGUg--CAGGa--GGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 10792 0.69 0.544726
Target:  5'- gGCGCgucCCGagaGUCUcgaCCGCGGAGGAc- -3'
miRNA:   3'- -CGCGa--GGUg--CAGGa--GGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 78417 0.71 0.441151
Target:  5'- -aGuCUCCAgGUUCUcaCCGUGGAGGAUGu -3'
miRNA:   3'- cgC-GAGGUgCAGGA--GGCGCCUCCUAU- -5'
2880 3' -59.2 NC_001493.1 + 126167 0.71 0.432281
Target:  5'- cGCGgcucgaUCCGgGUCCUCCGCGGucGAg- -3'
miRNA:   3'- -CGCg-----AGGUgCAGGAGGCGCCucCUau -5'
2880 3' -59.2 NC_001493.1 + 10613 0.71 0.432281
Target:  5'- cGCGgcucgaUCCGgGUCCUCCGCGGucGAg- -3'
miRNA:   3'- -CGCg-----AGGUgCAGGAGGCGCCucCUau -5'
2880 3' -59.2 NC_001493.1 + 9296 0.73 0.342065
Target:  5'- uGCGuCUCCuccacgaaagauACGaggcguggcuaUCCUCCGCGGAGGAc- -3'
miRNA:   3'- -CGC-GAGG------------UGC-----------AGGAGGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 124850 0.73 0.342065
Target:  5'- uGCGuCUCCuccacgaaagauACGaggcguggcuaUCCUCCGCGGAGGAc- -3'
miRNA:   3'- -CGC-GAGG------------UGC-----------AGGAGGCGCCUCCUau -5'
2880 3' -59.2 NC_001493.1 + 60299 0.75 0.285482
Target:  5'- cGCGC-CCGCGguaUUCCGCGGAGGuGUGa -3'
miRNA:   3'- -CGCGaGGUGCag-GAGGCGCCUCC-UAU- -5'
2880 3' -59.2 NC_001493.1 + 9488 0.97 0.009452
Target:  5'- cGCGCUCCACGU-CUCCGCGGAGGAUAg -3'
miRNA:   3'- -CGCGAGGUGCAgGAGGCGCCUCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.