miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28800 3' -51.6 NC_006146.1 + 106016 0.66 0.986644
Target:  5'- -cUUUCUUCAGUccaUGcUGGC-CGUGGCc -3'
miRNA:   3'- uuGAAGAAGUCGa--AC-ACCGcGUACCG- -5'
28800 3' -51.6 NC_006146.1 + 125599 0.66 0.982956
Target:  5'- gAGCUguUCUcCGGCUUuccaccgaggGUGGgGCAUGGg -3'
miRNA:   3'- -UUGA--AGAaGUCGAA----------CACCgCGUACCg -5'
28800 3' -51.6 NC_006146.1 + 55307 0.66 0.982956
Target:  5'- gGACUUCUUCAGCgucuucccGGC-CGaGGCa -3'
miRNA:   3'- -UUGAAGAAGUCGaaca----CCGcGUaCCG- -5'
28800 3' -51.6 NC_006146.1 + 4352 0.68 0.963921
Target:  5'- cAGC-UCUUCAGCgacGUGGC-CAcGGCc -3'
miRNA:   3'- -UUGaAGAAGUCGaa-CACCGcGUaCCG- -5'
28800 3' -51.6 NC_006146.1 + 69368 0.68 0.960317
Target:  5'- gGACguagUCAGUgcccUGGCGCAUGGUu -3'
miRNA:   3'- -UUGaagaAGUCGaac-ACCGCGUACCG- -5'
28800 3' -51.6 NC_006146.1 + 112771 0.69 0.938591
Target:  5'- uGACUUgCUUUGGC-UGUGuGCGCuUGGUg -3'
miRNA:   3'- -UUGAA-GAAGUCGaACAC-CGCGuACCG- -5'
28800 3' -51.6 NC_006146.1 + 66553 0.69 0.928107
Target:  5'- cGAUgUCUUUgauCUUGUGGCGCA-GGCg -3'
miRNA:   3'- -UUGaAGAAGuc-GAACACCGCGUaCCG- -5'
28800 3' -51.6 NC_006146.1 + 133638 0.73 0.789825
Target:  5'- gGACUuggCUg-GGCUuugaUGUGGUGCAUGGCc -3'
miRNA:   3'- -UUGAa--GAagUCGA----ACACCGCGUACCG- -5'
28800 3' -51.6 NC_006146.1 + 107460 1.09 0.00657
Target:  5'- aAACUUCUUCAGCUUGUGGCGCAUGGCc -3'
miRNA:   3'- -UUGAAGAAGUCGAACACCGCGUACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.