Results 21 - 37 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 143497 | 0.68 | 0.986599 |
Target: 5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3' miRNA: 3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 152730 | 0.68 | 0.986599 |
Target: 5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3' miRNA: 3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 135957 | 0.68 | 0.986599 |
Target: 5'- gUGCCACgucaccccgggGUGCUGGGGUGGgGGAUg -3' miRNA: 3'- gGCGGUGa----------CGCGAUUUCAUCaUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 32127 | 0.68 | 0.986599 |
Target: 5'- gUGCCACgucaccccgggGUGCUGGGGUGGgGGAUg -3' miRNA: 3'- gGCGGUGa----------CGCGAUUUCAUCaUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 149653 | 0.68 | 0.986599 |
Target: 5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3' miRNA: 3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 399 | 0.68 | 0.984854 |
Target: 5'- cCCGCCGC-GCGCUGGGGguccggGGAa- -3' miRNA: 3'- -GGCGGUGaCGCGAUUUCauca--UCUgu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 147558 | 0.69 | 0.978576 |
Target: 5'- gCGCCAg-GCGCUGAGGUcGGUcuGCAg -3' miRNA: 3'- gGCGGUgaCGCGAUUUCA-UCAucUGU- -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 48317 | 0.69 | 0.973435 |
Target: 5'- aCCGUCGgagGUGCUGGcGGUGGUGGGCc -3' miRNA: 3'- -GGCGGUga-CGCGAUU-UCAUCAUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 68263 | 0.69 | 0.973435 |
Target: 5'- cCCGCCAC-GCGgUGGAGgGGcgGGGCGu -3' miRNA: 3'- -GGCGGUGaCGCgAUUUCaUCa-UCUGU- -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 53739 | 0.7 | 0.967453 |
Target: 5'- gCCGCgGCUGCGCc-GGGgcGaAGACGg -3' miRNA: 3'- -GGCGgUGACGCGauUUCauCaUCUGU- -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 26540 | 0.7 | 0.967453 |
Target: 5'- -aGCCACaGCGUUAGccUGGUGGGCGu -3' miRNA: 3'- ggCGGUGaCGCGAUUucAUCAUCUGU- -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 18851 | 0.7 | 0.96413 |
Target: 5'- aCC-CCGg-GCGCUGccgGGGUGGUGGACGu -3' miRNA: 3'- -GGcGGUgaCGCGAU---UUCAUCAUCUGU- -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 94087 | 0.72 | 0.898595 |
Target: 5'- gCCGCCG-UG-GCUGAAGgcGUAGACc -3' miRNA: 3'- -GGCGGUgACgCGAUUUCauCAUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 94949 | 0.73 | 0.884737 |
Target: 5'- -gGCCGCUGCGgUAGAGgggGGUGuGCAg -3' miRNA: 3'- ggCGGUGACGCgAUUUCa--UCAUcUGU- -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 108547 | 0.74 | 0.846 |
Target: 5'- uCCGgCGCgGCGUUGGAGUGGcUGGGCu -3' miRNA: 3'- -GGCgGUGaCGCGAUUUCAUC-AUCUGu -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 166366 | 0.74 | 0.829001 |
Target: 5'- -aGCCGCUGUGggAAAGUAGaaUAGGCGg -3' miRNA: 3'- ggCGGUGACGCgaUUUCAUC--AUCUGU- -5' |
|||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 107497 | 1.12 | 0.007835 |
Target: 5'- gCCGCCACUGCGCUAAAGUAGUAGACAa -3' miRNA: 3'- -GGCGGUGACGCGAUUUCAUCAUCUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home