miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28801 3' -60.1 NC_006146.1 + 53021 0.68 0.631934
Target:  5'- gGcCUCacgcggCUGGCcGCGgcCGCCGCCGa -3'
miRNA:   3'- aCaGAG------GACCGuCGCauGCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 154642 0.7 0.514727
Target:  5'- gGUCUUUUGGC-GCGc-UGCCGCCGg -3'
miRNA:   3'- aCAGAGGACCGuCGCauGCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 33341 0.7 0.505296
Target:  5'- gGUgCUCCggGGCAGCcggGUG-GCCGCCGg -3'
miRNA:   3'- aCA-GAGGa-CCGUCG---CAUgCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 33219 0.7 0.505296
Target:  5'- gGUgCUCCggGGCAGCcggGUG-GCCGCCGg -3'
miRNA:   3'- aCA-GAGGa-CCGUCG---CAUgCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 64414 0.72 0.407293
Target:  5'- aUGUaggCCggggccacGGCGGCGUACGCUGCCa- -3'
miRNA:   3'- -ACAga-GGa-------CCGUCGCAUGCGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 65062 0.66 0.739425
Target:  5'- aG-CUCUUGGCAGCGccuccggAUGUCgGCCGg -3'
miRNA:   3'- aCaGAGGACCGUCGCa------UGCGG-CGGCa -5'
28801 3' -60.1 NC_006146.1 + 53506 0.66 0.767357
Target:  5'- gGUCUggcUCUGGCuGCGg--GCCGCgCGUg -3'
miRNA:   3'- aCAGA---GGACCGuCGCaugCGGCG-GCA- -5'
28801 3' -60.1 NC_006146.1 + 111213 0.66 0.758148
Target:  5'- cGcCUCC-GGCAcCGgcauUGCCGCCGUg -3'
miRNA:   3'- aCaGAGGaCCGUcGCau--GCGGCGGCA- -5'
28801 3' -60.1 NC_006146.1 + 159326 0.66 0.748835
Target:  5'- aGUUgaggCUGGcCGGCGUcucguGCGCCGCCu- -3'
miRNA:   3'- aCAGag--GACC-GUCGCA-----UGCGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 56364 0.66 0.748835
Target:  5'- aGUaggCgUGGUGGCGgagcacCGCCGCCGg -3'
miRNA:   3'- aCAga-GgACCGUCGCau----GCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 119927 0.67 0.691223
Target:  5'- gGUCagUgUUGGCAGCG-GCGCUGCUGc -3'
miRNA:   3'- aCAG--AgGACCGUCGCaUGCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 128118 0.66 0.758148
Target:  5'- ----aCCUGGCcgaGGCGgccacGCGCCGCCu- -3'
miRNA:   3'- acagaGGACCG---UCGCa----UGCGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 42368 0.67 0.691223
Target:  5'- cGUCUUCgUGGCGGuCGUGaGCCGCaaCGUc -3'
miRNA:   3'- aCAGAGG-ACCGUC-GCAUgCGGCG--GCA- -5'
28801 3' -60.1 NC_006146.1 + 64642 0.66 0.748835
Target:  5'- aUGUCuUCCgccggGGCcaGGgGcACGUCGCCGUg -3'
miRNA:   3'- -ACAG-AGGa----CCG--UCgCaUGCGGCGGCA- -5'
28801 3' -60.1 NC_006146.1 + 113947 0.66 0.767357
Target:  5'- gGUCUCUUGaGa---GUAUGCUGCCGUg -3'
miRNA:   3'- aCAGAGGAC-CgucgCAUGCGGCGGCA- -5'
28801 3' -60.1 NC_006146.1 + 51005 0.66 0.729927
Target:  5'- aGgCUCCUcuacgucagacaGGUAGCGUACGagGCCGg -3'
miRNA:   3'- aCaGAGGA------------CCGUCGCAUGCggCGGCa -5'
28801 3' -60.1 NC_006146.1 + 60660 0.69 0.581467
Target:  5'- -aUCUCCUGGCuucgugacaagguGGCGgcUGCCGUCa- -3'
miRNA:   3'- acAGAGGACCG-------------UCGCauGCGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 14399 0.7 0.505296
Target:  5'- --cCUCCgGGCcGCGUACGCCGUagaGUu -3'
miRNA:   3'- acaGAGGaCCGuCGCAUGCGGCGg--CA- -5'
28801 3' -60.1 NC_006146.1 + 116156 0.7 0.509059
Target:  5'- gGUCUCCUucGGCAGCG-ACcugagucuccccucgGCCGCCc- -3'
miRNA:   3'- aCAGAGGA--CCGUCGCaUG---------------CGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 43041 0.7 0.543426
Target:  5'- cGUg-CCUGGCGGa-UACGCCGCCu- -3'
miRNA:   3'- aCAgaGGACCGUCgcAUGCGGCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.