miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28801 3' -60.1 NC_006146.1 + 123931 0.69 0.602189
Target:  5'- --aUUCCUGGCGGCGgccGgGCCGgCGa -3'
miRNA:   3'- acaGAGGACCGUCGCa--UgCGGCgGCa -5'
28801 3' -60.1 NC_006146.1 + 120499 0.69 0.582451
Target:  5'- cGUC-CCUGGCGGCcgaggACGCgaGCCGc -3'
miRNA:   3'- aCAGaGGACCGUCGca---UGCGg-CGGCa -5'
28801 3' -60.1 NC_006146.1 + 60660 0.69 0.581467
Target:  5'- -aUCUCCUGGCuucgugacaagguGGCGgcUGCCGUCa- -3'
miRNA:   3'- acAGAGGACCG-------------UCGCauGCGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 120782 0.69 0.578518
Target:  5'- aUGUC-CCUGGCGgaggucgccgguccGCGUggccggacaagcgGgGCCGCCGUg -3'
miRNA:   3'- -ACAGaGGACCGU--------------CGCA-------------UgCGGCGGCA- -5'
28801 3' -60.1 NC_006146.1 + 24036 0.69 0.562847
Target:  5'- cGUCccCCUGGCGGgGUgACGCgGCCc- -3'
miRNA:   3'- aCAGa-GGACCGUCgCA-UGCGgCGGca -5'
28801 3' -60.1 NC_006146.1 + 43041 0.7 0.543426
Target:  5'- cGUg-CCUGGCGGa-UACGCCGCCu- -3'
miRNA:   3'- aCAgaGGACCGUCgcAUGCGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 154642 0.7 0.514727
Target:  5'- gGUCUUUUGGC-GCGc-UGCCGCCGg -3'
miRNA:   3'- aCAGAGGACCGuCGCauGCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 116156 0.7 0.509059
Target:  5'- gGUCUCCUucGGCAGCG-ACcugagucuccccucgGCCGCCc- -3'
miRNA:   3'- aCAGAGGA--CCGUCGCaUG---------------CGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 33341 0.7 0.505296
Target:  5'- gGUgCUCCggGGCAGCcggGUG-GCCGCCGg -3'
miRNA:   3'- aCA-GAGGa-CCGUCG---CAUgCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 33219 0.7 0.505296
Target:  5'- gGUgCUCCggGGCAGCcggGUG-GCCGCCGg -3'
miRNA:   3'- aCA-GAGGa-CCGUCG---CAUgCGGCGGCa -5'
28801 3' -60.1 NC_006146.1 + 14399 0.7 0.505296
Target:  5'- --cCUCCgGGCcGCGUACGCCGUagaGUu -3'
miRNA:   3'- acaGAGGaCCGuCGCAUGCGGCGg--CA- -5'
28801 3' -60.1 NC_006146.1 + 64414 0.72 0.407293
Target:  5'- aUGUaggCCggggccacGGCGGCGUACGCUGCCa- -3'
miRNA:   3'- -ACAga-GGa-------CCGUCGCAUGCGGCGGca -5'
28801 3' -60.1 NC_006146.1 + 106472 1.07 0.001761
Target:  5'- cUGUCUCCUGGCAGCGUACGCCGCCGUg -3'
miRNA:   3'- -ACAGAGGACCGUCGCAUGCGGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.