miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28802 3' -63.9 NC_006146.1 + 49422 0.66 0.62865
Target:  5'- uGGCG-GCCCCcacgaUGGaCCCGGCGuuGGc -3'
miRNA:   3'- gCUGCaCGGGG-----ACCgGGGCCGCcuUC- -5'
28802 3' -63.9 NC_006146.1 + 114691 0.66 0.622899
Target:  5'- gGACGgcucGCggcucguccgcgagaCCCgGGCCCUGGCGGccGAGu -3'
miRNA:   3'- gCUGCa---CG---------------GGGaCCGGGGCCGCC--UUC- -5'
28802 3' -63.9 NC_006146.1 + 118315 0.66 0.622899
Target:  5'- gGACGUGCCCa--GCUcggugacgcugagggCCGGCGGGc- -3'
miRNA:   3'- gCUGCACGGGgacCGG---------------GGCCGCCUuc -5'
28802 3' -63.9 NC_006146.1 + 100693 0.66 0.619066
Target:  5'- -cGCG-GCCCUcGGCaCCCGGCGcugcGggGg -3'
miRNA:   3'- gcUGCaCGGGGaCCG-GGGCCGC----CuuC- -5'
28802 3' -63.9 NC_006146.1 + 123037 0.66 0.619066
Target:  5'- aGGCG-GCCCa-GGUCCgGGCgcuGGAGGa -3'
miRNA:   3'- gCUGCaCGGGgaCCGGGgCCG---CCUUC- -5'
28802 3' -63.9 NC_006146.1 + 40364 0.66 0.619066
Target:  5'- gCGGCGgagaagGcCCCCUGGUcgccgCCCGGCGcGuAGu -3'
miRNA:   3'- -GCUGCa-----C-GGGGACCG-----GGGCCGC-CuUC- -5'
28802 3' -63.9 NC_006146.1 + 125349 0.66 0.60949
Target:  5'- gGACGUGUCuucccuccccugCCUGGCCCUGGUc---- -3'
miRNA:   3'- gCUGCACGG------------GGACCGGGGCCGccuuc -5'
28802 3' -63.9 NC_006146.1 + 156227 0.66 0.60949
Target:  5'- aGACGcggGCCCCcucGGCCgUGGaCGGGGu -3'
miRNA:   3'- gCUGCa--CGGGGa--CCGGgGCC-GCCUUc -5'
28802 3' -63.9 NC_006146.1 + 3581 0.66 0.608533
Target:  5'- aCGACGggacGCCCCgccGGCCCCcccugcaGGCGccGGc -3'
miRNA:   3'- -GCUGCa---CGGGGa--CCGGGG-------CCGCcuUC- -5'
28802 3' -63.9 NC_006146.1 + 2649 0.66 0.608533
Target:  5'- aCGACGggacGCCCCgccGGCCCCcccugcaGGCGccGGc -3'
miRNA:   3'- -GCUGCa---CGGGGa--CCGGGG-------CCGCcuUC- -5'
28802 3' -63.9 NC_006146.1 + 1717 0.66 0.608533
Target:  5'- aCGACGggacGCCCCgccGGCCCCcccugcaGGCGccGGc -3'
miRNA:   3'- -GCUGCa---CGGGGa--CCGGGG-------CCGCcuUC- -5'
28802 3' -63.9 NC_006146.1 + 54251 0.66 0.599929
Target:  5'- gGGCG-GCCCC-GGUCa-GGCGGGAa -3'
miRNA:   3'- gCUGCaCGGGGaCCGGggCCGCCUUc -5'
28802 3' -63.9 NC_006146.1 + 40581 0.66 0.590389
Target:  5'- uGAUGaGgUCCUGGCCCUgGGCGGccGa -3'
miRNA:   3'- gCUGCaCgGGGACCGGGG-CCGCCuuC- -5'
28802 3' -63.9 NC_006146.1 + 114225 0.66 0.589436
Target:  5'- gGGCcaGCCCCaggGGgCCCGGCaccucagGGAGGg -3'
miRNA:   3'- gCUGcaCGGGGa--CCgGGGCCG-------CCUUC- -5'
28802 3' -63.9 NC_006146.1 + 99547 0.66 0.580876
Target:  5'- aCGACGguuCCCaCUGGCaCCCcagcaGGUGGAAa -3'
miRNA:   3'- -GCUGCac-GGG-GACCG-GGG-----CCGCCUUc -5'
28802 3' -63.9 NC_006146.1 + 167416 0.66 0.580876
Target:  5'- uGGCGgggGCCagCgcggGGUCCCggGGCGGggGg -3'
miRNA:   3'- gCUGCa--CGGg-Ga---CCGGGG--CCGCCuuC- -5'
28802 3' -63.9 NC_006146.1 + 62101 0.66 0.580876
Target:  5'- uGGCG-GCaggaCUGcucGCCUCGGCGGGAGa -3'
miRNA:   3'- gCUGCaCGgg--GAC---CGGGGCCGCCUUC- -5'
28802 3' -63.9 NC_006146.1 + 168348 0.66 0.580876
Target:  5'- uGGCGgggGCCagCgcggGGUCCCggGGCGGggGg -3'
miRNA:   3'- gCUGCa--CGGg-Ga---CCGGGG--CCGCCuuC- -5'
28802 3' -63.9 NC_006146.1 + 170211 0.66 0.580876
Target:  5'- uGGCGgggGCCagCgcggGGUCCCggGGCGGggGg -3'
miRNA:   3'- gCUGCa--CGGg-Ga---CCGGGG--CCGCCuuC- -5'
28802 3' -63.9 NC_006146.1 + 169280 0.66 0.580876
Target:  5'- uGGCGgggGCCagCgcggGGUCCCggGGCGGggGg -3'
miRNA:   3'- gCUGCa--CGGg-Ga---CCGGGG--CCGCCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.