miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28802 5' -55 NC_006146.1 + 48933 0.65 0.954937
Target:  5'- aGGUUUGUGUCGggGAccaGCCUCAGgGAGu -3'
miRNA:   3'- -CCGGACGCGGUa-CU---UGGAGUCgUUCc -5'
28802 5' -55 NC_006146.1 + 28257 0.65 0.954937
Target:  5'- aGCCgagcaCGCCAUGGGCUUCggGGCAucuugAGGc -3'
miRNA:   3'- cCGGac---GCGGUACUUGGAG--UCGU-----UCC- -5'
28802 5' -55 NC_006146.1 + 60487 0.65 0.954937
Target:  5'- aGGCCgggGgGCCAgcucccCCgaCGGCGAGGg -3'
miRNA:   3'- -CCGGa--CgCGGUacuu--GGa-GUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 15792 0.65 0.954937
Target:  5'- aGGCCcGCgGCCAUugGGGCCagcaAGCGAGa -3'
miRNA:   3'- -CCGGaCG-CGGUA--CUUGGag--UCGUUCc -5'
28802 5' -55 NC_006146.1 + 159555 0.65 0.954937
Target:  5'- cGCCUGCGCCA-GGcCCguguaCAGCGu-- -3'
miRNA:   3'- cCGGACGCGGUaCUuGGa----GUCGUucc -5'
28802 5' -55 NC_006146.1 + 28103 0.65 0.954937
Target:  5'- aGGCCcGCgGCCAUugGGGCCagcaAGCGAGa -3'
miRNA:   3'- -CCGGaCG-CGGUA--CUUGGag--UCGUUCc -5'
28802 5' -55 NC_006146.1 + 12713 0.65 0.954937
Target:  5'- aGGCCcGCgGCCAUugGGGCCagcaAGCGAGa -3'
miRNA:   3'- -CCGGaCG-CGGUA--CUUGGag--UCGUUCc -5'
28802 5' -55 NC_006146.1 + 18870 0.65 0.954937
Target:  5'- aGGCCcGCgGCCAUugGGGCCagcaAGCGAGa -3'
miRNA:   3'- -CCGGaCG-CGGUA--CUUGGag--UCGUUCc -5'
28802 5' -55 NC_006146.1 + 155466 0.65 0.954937
Target:  5'- --gCUGCGCCAggcaGGACUgCAGCcGGGc -3'
miRNA:   3'- ccgGACGCGGUa---CUUGGaGUCGuUCC- -5'
28802 5' -55 NC_006146.1 + 25025 0.65 0.954937
Target:  5'- aGGCCcGCgGCCAUugGGGCCagcaAGCGAGa -3'
miRNA:   3'- -CCGGaCG-CGGUA--CUUGGag--UCGUUCc -5'
28802 5' -55 NC_006146.1 + 70163 0.66 0.950935
Target:  5'- uGGCCgggGCGCUGguGGCC--GGCGAGGc -3'
miRNA:   3'- -CCGGa--CGCGGUacUUGGagUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 61541 0.66 0.950935
Target:  5'- uGGCCUacggGCGCaccuGUGu-CCUaGGCAAGGa -3'
miRNA:   3'- -CCGGA----CGCGg---UACuuGGAgUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 47411 0.66 0.950935
Target:  5'- uGGCCaGgGCCA---GCCUCAGCu--- -3'
miRNA:   3'- -CCGGaCgCGGUacuUGGAGUCGuucc -5'
28802 5' -55 NC_006146.1 + 63299 0.66 0.950935
Target:  5'- cGUgUGCGCCAUGGccacCCUCuGCAu-- -3'
miRNA:   3'- cCGgACGCGGUACUu---GGAGuCGUucc -5'
28802 5' -55 NC_006146.1 + 121354 0.66 0.950935
Target:  5'- gGGCCUG-GCCGgcguGGCCUCcGCccccaGAGGa -3'
miRNA:   3'- -CCGGACgCGGUac--UUGGAGuCG-----UUCC- -5'
28802 5' -55 NC_006146.1 + 43520 0.66 0.950935
Target:  5'- gGGCCagGCuGCCGgccACCaUCAGUggGGu -3'
miRNA:   3'- -CCGGa-CG-CGGUacuUGG-AGUCGuuCC- -5'
28802 5' -55 NC_006146.1 + 104673 0.66 0.950935
Target:  5'- uGCCUGCGCCGcGAuagaggggCAGCuGGGc -3'
miRNA:   3'- cCGGACGCGGUaCUugga----GUCGuUCC- -5'
28802 5' -55 NC_006146.1 + 136840 0.66 0.950935
Target:  5'- cGGCCccGUGCCAcgGGACCcccggcCGGCAuAGGc -3'
miRNA:   3'- -CCGGa-CGCGGUa-CUUGGa-----GUCGU-UCC- -5'
28802 5' -55 NC_006146.1 + 18991 0.66 0.946703
Target:  5'- gGGCCggaGCCA--GACCcCAGUggGGg -3'
miRNA:   3'- -CCGGacgCGGUacUUGGaGUCGuuCC- -5'
28802 5' -55 NC_006146.1 + 124132 0.66 0.946703
Target:  5'- cGGCCaGCcauccGCCcgGggUCgggaGGCGAGGa -3'
miRNA:   3'- -CCGGaCG-----CGGuaCuuGGag--UCGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.