miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28802 5' -55 NC_006146.1 + 106291 1.12 0.002492
Target:  5'- uGGCCUGCGCCAUGAACCUCAGCAAGGu -3'
miRNA:   3'- -CCGGACGCGGUACUUGGAGUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 165736 0.87 0.109678
Target:  5'- gGGCCUG-GCCAgGAACUUCAGCAGGGc -3'
miRNA:   3'- -CCGGACgCGGUaCUUGGAGUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 110270 0.83 0.188127
Target:  5'- uGGCCUGCagagccccgucuGCCAUGAugGCCUCGGCGuAGGc -3'
miRNA:   3'- -CCGGACG------------CGGUACU--UGGAGUCGU-UCC- -5'
28802 5' -55 NC_006146.1 + 47546 0.79 0.34158
Target:  5'- cGGCCaGCGCCA-GAGcucCCUCGGCGAGa -3'
miRNA:   3'- -CCGGaCGCGGUaCUU---GGAGUCGUUCc -5'
28802 5' -55 NC_006146.1 + 42633 0.76 0.451233
Target:  5'- cGGCC-GcCGCCGUGGGCCUCAcGUAGuGGg -3'
miRNA:   3'- -CCGGaC-GCGGUACUUGGAGU-CGUU-CC- -5'
28802 5' -55 NC_006146.1 + 55054 0.76 0.460448
Target:  5'- gGGCCUGCcacaggcgGCCGUaucGGACCcaCAGCAGGGa -3'
miRNA:   3'- -CCGGACG--------CGGUA---CUUGGa-GUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 45532 0.75 0.495375
Target:  5'- gGGCCUGgGCCuccuUGGgcuuggccgcccugGCCUCcGCGAGGa -3'
miRNA:   3'- -CCGGACgCGGu---ACU--------------UGGAGuCGUUCC- -5'
28802 5' -55 NC_006146.1 + 155215 0.75 0.49826
Target:  5'- uGGCCUGgGCUGUGAgGCCUCgagGGCcGGGu -3'
miRNA:   3'- -CCGGACgCGGUACU-UGGAG---UCGuUCC- -5'
28802 5' -55 NC_006146.1 + 142903 0.75 0.49826
Target:  5'- uGGCCUGgGCUGUGAgGCCUCgagGGCcGGGu -3'
miRNA:   3'- -CCGGACgCGGUACU-UGGAG---UCGuUCC- -5'
28802 5' -55 NC_006146.1 + 145981 0.75 0.49826
Target:  5'- uGGCCUGgGCUGUGAgGCCUCgagGGCcGGGu -3'
miRNA:   3'- -CCGGACgCGGUACU-UGGAG---UCGuUCC- -5'
28802 5' -55 NC_006146.1 + 158294 0.75 0.49826
Target:  5'- uGGCCUGgGCUGUGAgGCCUCgagGGCcGGGu -3'
miRNA:   3'- -CCGGACgCGGUACU-UGGAG---UCGuUCC- -5'
28802 5' -55 NC_006146.1 + 149059 0.75 0.49826
Target:  5'- uGGCCUGgGCUGUGAgGCCUCgagGGCcGGGu -3'
miRNA:   3'- -CCGGACgCGGUACU-UGGAG---UCGuUCC- -5'
28802 5' -55 NC_006146.1 + 152137 0.75 0.49826
Target:  5'- uGGCCUGgGCUGUGAgGCCUCgagGGCcGGGu -3'
miRNA:   3'- -CCGGACgCGGUACU-UGGAG---UCGuUCC- -5'
28802 5' -55 NC_006146.1 + 13388 0.75 0.517681
Target:  5'- uGGUCUGCgcgGCCAcgGAcuGCCUCAGCcAGGu -3'
miRNA:   3'- -CCGGACG---CGGUa-CU--UGGAGUCGuUCC- -5'
28802 5' -55 NC_006146.1 + 46380 0.75 0.52455
Target:  5'- uGCCUGCuguuGCUguGUGAgaggggguuggcuaGCCUCAGCGAGGu -3'
miRNA:   3'- cCGGACG----CGG--UACU--------------UGGAGUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 34141 0.75 0.537397
Target:  5'- cGGCCggGCcuCCcgGAGCCcCGGCGAGGg -3'
miRNA:   3'- -CCGGa-CGc-GGuaCUUGGaGUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 40821 0.74 0.59787
Target:  5'- uGGCCUugGCCAUGAGCUU-GGUAAGGg -3'
miRNA:   3'- -CCGGAcgCGGUACUUGGAgUCGUUCC- -5'
28802 5' -55 NC_006146.1 + 41850 0.73 0.628537
Target:  5'- uGUCUGCGCCGgcgucUGGGCC-CAGCucGGg -3'
miRNA:   3'- cCGGACGCGGU-----ACUUGGaGUCGuuCC- -5'
28802 5' -55 NC_006146.1 + 94404 0.73 0.638774
Target:  5'- aGGUgUGgGCCGUGAGgCUUGGCAGGc -3'
miRNA:   3'- -CCGgACgCGGUACUUgGAGUCGUUCc -5'
28802 5' -55 NC_006146.1 + 157339 0.73 0.645938
Target:  5'- cGGCCUgcuugcgcagcccgGCGCCcgGcGCCUgCAGCAGGu -3'
miRNA:   3'- -CCGGA--------------CGCGGuaCuUGGA-GUCGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.