miRNA display CGI


Results 181 - 200 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 136803 0.68 0.642424
Target:  5'- cGGGGCGCgCUGGgucgcGGCUgccccCCGGGAcccccgGCCCCg -3'
miRNA:   3'- -UCUCGCG-GAUC-----CCGA-----GGUUCU------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170048 0.68 0.642424
Target:  5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3'
miRNA:   3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145220 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 148298 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 151376 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 136105 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 154454 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 157532 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 123051 0.69 0.563131
Target:  5'- cGGGCGCUggaggagAGGGUcCuCGAGAGCCgCg -3'
miRNA:   3'- uCUCGCGGa------UCCCGaG-GUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 3026 0.69 0.576887
Target:  5'- cGGGcCGCCccGGGGCUCCcccgcgccgaucuGAGCgCCCa -3'
miRNA:   3'- uCUC-GCGGa-UCCCGAGGuu-----------CUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 102873 0.69 0.593687
Target:  5'- uGAGCGCCaagaagcagccgcagGGGGacgCCAGGGGCCg- -3'
miRNA:   3'- uCUCGCGGa--------------UCCCga-GGUUCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 117542 0.69 0.543639
Target:  5'- -aAGCGCC--GGGCcagCCAAGAccucacgccGCCCCg -3'
miRNA:   3'- ucUCGCGGauCCCGa--GGUUCU---------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 141325 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 144403 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 2094 0.69 0.576887
Target:  5'- cGGGcCGCCccGGGGCUCCcccgcgccgaucuGAGCgCCCa -3'
miRNA:   3'- uCUC-GCGGa-UCCCGAGGuu-----------CUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 147481 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 150559 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 1162 0.69 0.576887
Target:  5'- cGGGcCGCCccGGGGCUCCcccgcgccgaucuGAGCgCCCa -3'
miRNA:   3'- uCUC-GCGGa-UCCCGAGGuu-----------CUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 156714 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 61824 0.69 0.572949
Target:  5'- aGGGGCGCUggugggggcagUGGGGCUggugCCGGGAcUCCCg -3'
miRNA:   3'- -UCUCGCGG-----------AUCCCGA----GGUUCUcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.