Results 81 - 100 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 83509 | 0.67 | 0.701746 |
Target: 5'- -uGGUGCCUcuccuggcgcAGGGUUCUGaucAGGGCCCa -3' miRNA: 3'- ucUCGCGGA----------UCCCGAGGU---UCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 14563 | 0.67 | 0.701746 |
Target: 5'- uGGGcCGCUUucGGGGCgu---GAGCCCCa -3' miRNA: 3'- uCUC-GCGGA--UCCCGagguuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 81647 | 0.67 | 0.69195 |
Target: 5'- cGGGaCG-UUGGGGCUCgGAGGGUgCCg -3' miRNA: 3'- uCUC-GCgGAUCCCGAGgUUCUCGgGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 158556 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 155477 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 152399 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 130044 | 0.67 | 0.662311 |
Target: 5'- cGGAcCGCgaGccGGGcCUCCAAGAGCgCCCc -3' miRNA: 3'- -UCUcGCGgaU--CCC-GAGGUUCUCG-GGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 157843 | 0.67 | 0.682107 |
Target: 5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3' miRNA: 3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 126478 | 0.67 | 0.711487 |
Target: 5'- cGGGUGCC-AGa-CcCCGGGAGCCCCu -3' miRNA: 3'- uCUCGCGGaUCccGaGGUUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 44775 | 0.67 | 0.711487 |
Target: 5'- gAGGGUGCCgugccGGGCUCagGGGGGCgCa -3' miRNA: 3'- -UCUCGCGGau---CCCGAGg-UUCUCGgGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 157749 | 0.67 | 0.710515 |
Target: 5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3' miRNA: 3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 151594 | 0.67 | 0.710515 |
Target: 5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3' miRNA: 3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 148516 | 0.67 | 0.710515 |
Target: 5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3' miRNA: 3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 124937 | 0.67 | 0.659333 |
Target: 5'- aGGAGCuGCCccGGGCagagagcgucgaggUCCccaGAGAGaCCCCg -3' miRNA: 3'- -UCUCG-CGGauCCCG--------------AGG---UUCUC-GGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 28780 | 0.67 | 0.662311 |
Target: 5'- gGGAGCauacccugggGCCgAGGGCUCacuuGGGGCagCCCa -3' miRNA: 3'- -UCUCG----------CGGaUCCCGAGgu--UCUCG--GGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 168344 | 0.67 | 0.662311 |
Target: 5'- cAGAGCcUCaguGGGCUgaagaaCCAGGuGCCCCg -3' miRNA: 3'- -UCUCGcGGau-CCCGA------GGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 145438 | 0.67 | 0.710515 |
Target: 5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3' miRNA: 3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 143165 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 146243 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 149321 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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