miRNA display CGI


Results 101 - 120 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 22644 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 25722 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28800 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145438 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 83509 0.67 0.701746
Target:  5'- -uGGUGCCUcuccuggcgcAGGGUUCUGaucAGGGCCCa -3'
miRNA:   3'- ucUCGCGGA----------UCCCGAGGU---UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 43217 0.67 0.701746
Target:  5'- uGGGGCGCUgcuGGUgagAGGAGCCCCc -3'
miRNA:   3'- -UCUCGCGGaucCCGaggUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 14563 0.67 0.701746
Target:  5'- uGGGcCGCUUucGGGGCgu---GAGCCCCa -3'
miRNA:   3'- uCUC-GCGGA--UCCCGagguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 119728 0.67 0.69195
Target:  5'- cGAGCaGCCUccccGGCUCCAc-AGCCCa -3'
miRNA:   3'- uCUCG-CGGAuc--CCGAGGUucUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 142360 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 124937 0.67 0.659333
Target:  5'- aGGAGCuGCCccGGGCagagagcgucgaggUCCccaGAGAGaCCCCg -3'
miRNA:   3'- -UCUCG-CGGauCCCG--------------AGG---UUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 136012 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135919 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136198 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 151376 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 136291 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135826 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170048 0.68 0.642424
Target:  5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3'
miRNA:   3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 154454 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 157532 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 148298 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.