miRNA display CGI


Results 121 - 140 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 48981 0.68 0.636448
Target:  5'- uGAGCGUCUGGGagaGCUgauucugcagaccggCUAGGAGCCgCa -3'
miRNA:   3'- uCUCGCGGAUCC---CGA---------------GGUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 60888 0.68 0.632464
Target:  5'- cAGAcCgGCCUGGGGCccaguggaUCCAGGAGCUg- -3'
miRNA:   3'- -UCUcG-CGGAUCCCG--------AGGUUCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 139131 0.68 0.642424
Target:  5'- gGGGGCuguggGCCgaacgGGGGCUCCcgucccccggGGGGGCgCCu -3'
miRNA:   3'- -UCUCG-----CGGa----UCCCGAGG----------UUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 136570 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136477 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137406 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137313 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170668 0.68 0.652375
Target:  5'- -cGGCGCg-GGGGaggCCAGGGGCgCCCc -3'
miRNA:   3'- ucUCGCGgaUCCCga-GGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 137034 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136941 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137220 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 34035 0.68 0.642424
Target:  5'- cGGGCGugguCCcGGGGCcuaugccggCCGGGGGUCCCg -3'
miRNA:   3'- uCUCGC----GGaUCCCGa--------GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 162360 0.68 0.632464
Target:  5'- uGAGCGCCUuGGaGau---GGAGCCCCu -3'
miRNA:   3'- uCUCGCGGAuCC-CgagguUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44067 0.68 0.631468
Target:  5'- uGGGGCGCCUgcaugccgggacuGGGGUgguUCCAccucGGGCCgCg -3'
miRNA:   3'- -UCUCGCGGA-------------UCCCG---AGGUu---CUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 163215 0.68 0.621509
Target:  5'- aGGAGCcgggcagGCCgUAGGcaggguagcgcuGCUCCAGGAaCCCCg -3'
miRNA:   3'- -UCUCG-------CGG-AUCC------------CGAGGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137592 0.68 0.612553
Target:  5'- uGGAGCucggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 158546 0.68 0.602614
Target:  5'- cGGGGUcCCUGGGGCUCCuucuccAGCuuCCCg -3'
miRNA:   3'- -UCUCGcGGAUCCCGAGGuuc---UCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 136803 0.68 0.642424
Target:  5'- cGGGGCGCgCUGGgucgcGGCUgccccCCGGGAcccccgGCCCCg -3'
miRNA:   3'- -UCUCGCG-GAUC-----CCGA-----GGUUCU------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 12852 0.68 0.602614
Target:  5'- aGGAgGCGCCUGGGGCgaggCUggGuGGCUg- -3'
miRNA:   3'- -UCU-CGCGGAUCCCGa---GGuuC-UCGGgg -5'
28803 3' -60.1 NC_006146.1 + 150685 0.68 0.642424
Target:  5'- gGGAGUgGCCaGGGGgaCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG-CGGaUCCCgaGgUUCUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.