miRNA display CGI


Results 161 - 180 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 135176 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136291 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136384 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136477 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136570 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135269 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145832 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 139131 0.68 0.642424
Target:  5'- gGGGGCuguggGCCgaacgGGGGCUCCcgucccccggGGGGGCgCCu -3'
miRNA:   3'- -UCUCG-----CGGa----UCCCGAGG----------UUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 65120 0.68 0.652375
Target:  5'- gGGAGC-CCUGGGugcccuugguGCUCUuGGAGCUCUu -3'
miRNA:   3'- -UCUCGcGGAUCC----------CGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170668 0.68 0.652375
Target:  5'- -cGGCGCg-GGGGaggCCAGGGGCgCCCc -3'
miRNA:   3'- ucUCGCGgaUCCCga-GGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 137499 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 151376 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 154454 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 157532 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 170048 0.68 0.642424
Target:  5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3'
miRNA:   3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136803 0.68 0.642424
Target:  5'- cGGGGCGCgCUGGgucgcGGCUgccccCCGGGAcccccgGCCCCg -3'
miRNA:   3'- -UCUCGCG-GAUC-----CCGA-----GGUUCU------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 150685 0.68 0.642424
Target:  5'- gGGAGUgGCCaGGGGgaCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG-CGGaUCCCgaGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 18855 0.68 0.652375
Target:  5'- cGGGCGCUgccGGGGUgguggacgUgCGGGGGCCUCa -3'
miRNA:   3'- uCUCGCGGa--UCCCG--------AgGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 123145 0.68 0.652375
Target:  5'- uGGAGgccguacuCGCC-AGGGCgcgCgAGGAGgCCCCg -3'
miRNA:   3'- -UCUC--------GCGGaUCCCGa--GgUUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 137406 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.