miRNA display CGI


Results 161 - 180 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 142218 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 76384 0.68 0.622505
Target:  5'- aGGGcGCGCCgggGGaGGgaCCGGGGGCgCCg -3'
miRNA:   3'- -UCU-CGCGGa--UC-CCgaGGUUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 8526 0.68 0.622505
Target:  5'- cGGGCGC---GGGCgcgCCAAGgGGCUCCa -3'
miRNA:   3'- uCUCGCGgauCCCGa--GGUUC-UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 122610 0.68 0.612553
Target:  5'- uGGAGgGCgaGGGGCggaggaggCCGGG-GCCCUc -3'
miRNA:   3'- -UCUCgCGgaUCCCGa-------GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 75799 0.68 0.602614
Target:  5'- cGGGCGUCUcGGGCgccgccUUCGAG-GCCCUg -3'
miRNA:   3'- uCUCGCGGAuCCCG------AGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 155751 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157608 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 150685 0.68 0.642424
Target:  5'- gGGAGUgGCCaGGGGgaCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG-CGGaUCCCgaGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 136803 0.68 0.642424
Target:  5'- cGGGGCGCgCUGGgucgcGGCUgccccCCGGGAcccccgGCCCCg -3'
miRNA:   3'- -UCUCGCG-GAUC-----CCGA-----GGUUCU------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170048 0.68 0.642424
Target:  5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3'
miRNA:   3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157532 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 154454 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 151376 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 148298 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 145220 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 158145 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 92270 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 92180 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 92120 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 13926 0.68 0.602614
Target:  5'- aGGAGUGgCggguGGGC-CCGggGGAGCCCa -3'
miRNA:   3'- -UCUCGCgGau--CCCGaGGU--UCUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.