Results 181 - 200 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 136803 | 0.68 | 0.642424 |
Target: 5'- cGGGGCGCgCUGGgucgcGGCUgccccCCGGGAcccccgGCCCCg -3' miRNA: 3'- -UCUCGCG-GAUC-----CCGA-----GGUUCU------CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 150685 | 0.68 | 0.642424 |
Target: 5'- gGGAGUgGCCaGGGGgaCgGAGGGCCUg -3' miRNA: 3'- -UCUCG-CGGaUCCCgaGgUUCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 170048 | 0.68 | 0.642424 |
Target: 5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3' miRNA: 3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 123145 | 0.68 | 0.652375 |
Target: 5'- uGGAGgccguacuCGCC-AGGGCgcgCgAGGAGgCCCCg -3' miRNA: 3'- -UCUC--------GCGGaUCCCGa--GgUUCUC-GGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 18855 | 0.68 | 0.652375 |
Target: 5'- cGGGCGCUgccGGGGUgguggacgUgCGGGGGCCUCa -3' miRNA: 3'- uCUCGCGGa--UCCCG--------AgGUUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 107518 | 0.68 | 0.652375 |
Target: 5'- gGGGGCGuCCUcuGGUUUaaaCAuGAGCCCCa -3' miRNA: 3'- -UCUCGC-GGAucCCGAG---GUuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 65120 | 0.68 | 0.652375 |
Target: 5'- gGGAGC-CCUGGGugcccuugguGCUCUuGGAGCUCUu -3' miRNA: 3'- -UCUCGcGGAUCC----------CGAGGuUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 110009 | 0.68 | 0.652375 |
Target: 5'- -uGGgGCCUcAGGGCUCCGuccugaucaaAGAugGCCUCg -3' miRNA: 3'- ucUCgCGGA-UCCCGAGGU----------UCU--CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135176 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135269 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135362 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135548 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135641 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135455 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135733 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135826 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 135919 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 136012 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 136105 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 136198 | 0.68 | 0.652375 |
Target: 5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3' miRNA: 3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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