miRNA display CGI


Results 81 - 100 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 62995 0.7 0.495984
Target:  5'- -uGGC-CCU-GGGCUCCGGGAGUCUg -3'
miRNA:   3'- ucUCGcGGAuCCCGAGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 125357 0.7 0.502548
Target:  5'- cGGAG-GCC-AGGGCggCCAAGcccaaggaggcccaGGCCCCc -3'
miRNA:   3'- -UCUCgCGGaUCCCGa-GGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33306 0.7 0.50443
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGGuccggguGCUCCg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCU-------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 34134 0.7 0.505373
Target:  5'- aGGAucGCgGCC--GGGcCUCCcGGAGCCCCg -3'
miRNA:   3'- -UCU--CG-CGGauCCC-GAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 63367 0.7 0.514837
Target:  5'- cAGGGCccuCCUGGGGCUcauguuuaaaCCAgaGGAcGCCCCc -3'
miRNA:   3'- -UCUCGc--GGAUCCCGA----------GGU--UCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 161771 0.7 0.514837
Target:  5'- gGGGGCGCCU-GGGCg---GGGGCCUg -3'
miRNA:   3'- -UCUCGCGGAuCCCGagguUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 137236 0.7 0.514837
Target:  5'- uGGGgGCCUGGGGUcCCGGGGaccacaCCCCu -3'
miRNA:   3'- uCUCgCGGAUCCCGaGGUUCUc-----GGGG- -5'
28803 3' -60.1 NC_006146.1 + 3424 0.7 0.518643
Target:  5'- cAGGGUGCCaauacuacgugcuGGGCUCCAc-GGUCCCg -3'
miRNA:   3'- -UCUCGCGGau-----------CCCGAGGUucUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 1332 0.7 0.524373
Target:  5'- cGAcGCGCgCUcGGGCcCCGGGgaAGCCCCc -3'
miRNA:   3'- uCU-CGCG-GAuCCCGaGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 2264 0.7 0.524373
Target:  5'- cGAcGCGCgCUcGGGCcCCGGGgaAGCCCCc -3'
miRNA:   3'- uCU-CGCG-GAuCCCGaGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 3196 0.7 0.524373
Target:  5'- cGAcGCGCgCUcGGGCcCCGGGgaAGCCCCc -3'
miRNA:   3'- uCU-CGCG-GAuCCCGaGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 18981 0.7 0.524373
Target:  5'- gAGGGCGgC-AGGGCcggagCCAgaccccagugGGGGCCCCc -3'
miRNA:   3'- -UCUCGCgGaUCCCGa----GGU----------UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 156252 0.7 0.524373
Target:  5'- cGGGGUGCCgugguuGGGCagcaCCAuGAGCUCCc -3'
miRNA:   3'- -UCUCGCGGau----CCCGa---GGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28421 0.7 0.524373
Target:  5'- aGGAgGCGgCUccGGGUcacUCCAcgGGAGCCCCa -3'
miRNA:   3'- -UCU-CGCgGAu-CCCG---AGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 30127 0.7 0.528206
Target:  5'- cAGAGCGCCcccaugcaggGGGGUgggcauggccacgcaUCCGAGAGCggcaaCCCc -3'
miRNA:   3'- -UCUCGCGGa---------UCCCG---------------AGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 112347 0.7 0.533975
Target:  5'- --uGUGCC-AGGGCUCCAuguaGGCCgCCa -3'
miRNA:   3'- ucuCGCGGaUCCCGAGGUuc--UCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 137406 0.7 0.533975
Target:  5'- gAGGGUG-CUGGGGUcCCGGGGaccacGCCCCu -3'
miRNA:   3'- -UCUCGCgGAUCCCGaGGUUCU-----CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41848 0.7 0.533975
Target:  5'- cGGGCcgugGCCaGGGGCUaCCGGG-GCCUCg -3'
miRNA:   3'- uCUCG----CGGaUCCCGA-GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 51572 0.7 0.533975
Target:  5'- uGGGCGCCgccgggaGGGGC-CCGggGGAGCCa- -3'
miRNA:   3'- uCUCGCGGa------UCCCGaGGU--UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 117542 0.69 0.543639
Target:  5'- -aAGCGCC--GGGCcagCCAAGAccucacgccGCCCCg -3'
miRNA:   3'- ucUCGCGGauCCCGa--GGUUCU---------CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.