miRNA display CGI


Results 101 - 120 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 155969 0.69 0.543639
Target:  5'- cAGAGUuCCagUAGagcaGCUCCGAGAGCUCCg -3'
miRNA:   3'- -UCUCGcGG--AUCc---CGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 147481 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 146183 0.69 0.55336
Target:  5'- cGAGCGCCUGGacgcuaguGCUgCAuGGGCUCCu -3'
miRNA:   3'- uCUCGCGGAUCc-------CGAgGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 141325 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 144403 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 150559 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 153637 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 156714 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 167689 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 168622 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 144396 0.69 0.563131
Target:  5'- uGGGUGUgUGGGGUcCCAGGcaAGCCCa -3'
miRNA:   3'- uCUCGCGgAUCCCGaGGUUC--UCGGGg -5'
28803 3' -60.1 NC_006146.1 + 123051 0.69 0.563131
Target:  5'- cGGGCGCUggaggagAGGGUcCuCGAGAGCCgCg -3'
miRNA:   3'- uCUCGCGGa------UCCCGaG-GUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 169554 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 15533 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 12454 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 51831 0.69 0.572949
Target:  5'- cGGGGCGgCguggaggGGGGCUCgGGGccuGGCCCg -3'
miRNA:   3'- -UCUCGCgGa------UCCCGAGgUUC---UCGGGg -5'
28803 3' -60.1 NC_006146.1 + 21689 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 168500 0.69 0.572949
Target:  5'- cGGGGgGCC--GGGgaCCAacAGAGCCCUc -3'
miRNA:   3'- -UCUCgCGGauCCCgaGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 61824 0.69 0.572949
Target:  5'- aGGGGCGCUggugggggcagUGGGGCUggugCCGGGAcUCCCg -3'
miRNA:   3'- -UCUCGCGG-----------AUCCCGA----GGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 18611 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.