miRNA display CGI


Results 121 - 140 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 61824 0.69 0.572949
Target:  5'- aGGGGCGCUggugggggcagUGGGGCUggugCCGGGAcUCCCg -3'
miRNA:   3'- -UCUCGCGG-----------AUCCCGA----GGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 15533 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 168500 0.69 0.572949
Target:  5'- cGGGGgGCC--GGGgaCCAacAGAGCCCUc -3'
miRNA:   3'- -UCUCgCGGauCCCgaGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 1162 0.69 0.576887
Target:  5'- cGGGcCGCCccGGGGCUCCcccgcgccgaucuGAGCgCCCa -3'
miRNA:   3'- uCUC-GCGGa-UCCCGAGGuu-----------CUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 3026 0.69 0.576887
Target:  5'- cGGGcCGCCccGGGGCUCCcccgcgccgaucuGAGCgCCCa -3'
miRNA:   3'- uCUC-GCGGa-UCCCGAGGuu-----------CUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 2094 0.69 0.576887
Target:  5'- cGGGcCGCCccGGGGCUCCcccgcgccgaucuGAGCgCCCa -3'
miRNA:   3'- uCUC-GCGGa-UCCCGAGGuu-----------CUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 105780 0.69 0.582806
Target:  5'- aAGAGCaCC-AGGGCaCCcAGGGCuCCCa -3'
miRNA:   3'- -UCUCGcGGaUCCCGaGGuUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 167654 0.69 0.582806
Target:  5'- --cGUGCCgGGGGC-CCGGGGGCguguCCCg -3'
miRNA:   3'- ucuCGCGGaUCCCGaGGUUCUCG----GGG- -5'
28803 3' -60.1 NC_006146.1 + 129129 0.69 0.582806
Target:  5'- cGGGCGCCcgggcgcAGGGcCUCCGgcgGGAaGCCCa -3'
miRNA:   3'- uCUCGCGGa------UCCC-GAGGU---UCU-CGGGg -5'
28803 3' -60.1 NC_006146.1 + 42685 0.69 0.582806
Target:  5'- uGGGCuGCCUGaGGCUggcAGAGCCCCc -3'
miRNA:   3'- uCUCG-CGGAUcCCGAgguUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 53881 0.69 0.582806
Target:  5'- -cAGCGCCcccgUAGGGCguagcccaggUCCAGG-GCCCg -3'
miRNA:   3'- ucUCGCGG----AUCCCG----------AGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 104210 0.69 0.592696
Target:  5'- cGGGGCcgcaaGCCgAGGGUUCaggGAGGuGCCCCg -3'
miRNA:   3'- -UCUCG-----CGGaUCCCGAGg--UUCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 13562 0.69 0.592696
Target:  5'- cGGGCGCC--GGGCUgcgcaagcaggCCGGGGGCUCa -3'
miRNA:   3'- uCUCGCGGauCCCGA-----------GGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 92061 0.69 0.592696
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 47768 0.69 0.592696
Target:  5'- cGAGUacgGCCUccAGGGCcgUCUGAaAGCCCCg -3'
miRNA:   3'- uCUCG---CGGA--UCCCG--AGGUUcUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 9466 0.69 0.592696
Target:  5'- --cGCGCCUuGGGUUCCcgcGGGGCCa- -3'
miRNA:   3'- ucuCGCGGAuCCCGAGGu--UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 102873 0.69 0.593687
Target:  5'- uGAGCGCCaagaagcagccgcagGGGGacgCCAGGGGCCg- -3'
miRNA:   3'- uCUCGCGGa--------------UCCCga-GGUUCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 142754 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41101 0.68 0.602614
Target:  5'- gGGAGCcagGCgUgcAGGGcCUCCAcuuuAGGGUCCCg -3'
miRNA:   3'- -UCUCG---CGgA--UCCC-GAGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145832 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.