miRNA display CGI


Results 141 - 160 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 145832 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41101 0.68 0.602614
Target:  5'- gGGAGCcagGCgUgcAGGGcCUCCAcuuuAGGGUCCCg -3'
miRNA:   3'- -UCUCG---CGgA--UCCC-GAGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142754 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 75799 0.68 0.602614
Target:  5'- cGGGCGUCUcGGGCgccgccUUCGAG-GCCCUg -3'
miRNA:   3'- uCUCGCGGAuCCCG------AGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 90546 0.68 0.602614
Target:  5'- cGGAGCGgUggagcAGGGC-CCGGGAGaagaCCCg -3'
miRNA:   3'- -UCUCGCgGa----UCCCGaGGUUCUCg---GGG- -5'
28803 3' -60.1 NC_006146.1 + 155066 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 158145 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 158546 0.68 0.602614
Target:  5'- cGGGGUcCCUGGGGCUCCuucuccAGCuuCCCg -3'
miRNA:   3'- -UCUCGcGGAUCCCGAGGuuc---UCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 13926 0.68 0.602614
Target:  5'- aGGAGUGgCggguGGGC-CCGggGGAGCCCa -3'
miRNA:   3'- -UCUCGCgGau--CCCGaGGU--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 137592 0.68 0.612553
Target:  5'- uGGAGCucggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 122610 0.68 0.612553
Target:  5'- uGGAGgGCgaGGGGCggaggaggCCGGG-GCCCUc -3'
miRNA:   3'- -UCUCgCGgaUCCCGa-------GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 163215 0.68 0.621509
Target:  5'- aGGAGCcgggcagGCCgUAGGcaggguagcgcuGCUCCAGGAaCCCCg -3'
miRNA:   3'- -UCUCG-------CGG-AUCC------------CGAGGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148374 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 76384 0.68 0.622505
Target:  5'- aGGGcGCGCCgggGGaGGgaCCGGGGGCgCCg -3'
miRNA:   3'- -UCU-CGCGGa--UC-CCgaGGUUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 142218 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 143440 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145296 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 146518 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 149596 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 8526 0.68 0.622505
Target:  5'- cGGGCGC---GGGCgcgCCAAGgGGCUCCa -3'
miRNA:   3'- uCUCGCGgauCCCGa--GGUUC-UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.