miRNA display CGI


Results 161 - 180 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 146518 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145296 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 143440 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142218 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 44067 0.68 0.631468
Target:  5'- uGGGGCGCCUgcaugccgggacuGGGGUgguUCCAccucGGGCCgCg -3'
miRNA:   3'- -UCUCGCGGA-------------UCCCG---AGGUu---CUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 142142 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 162360 0.68 0.632464
Target:  5'- uGAGCGCCUuGGaGau---GGAGCCCCu -3'
miRNA:   3'- uCUCGCGGAuCC-CgagguUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 60888 0.68 0.632464
Target:  5'- cAGAcCgGCCUGGGGCccaguggaUCCAGGAGCUg- -3'
miRNA:   3'- -UCUcG-CGGAUCCCG--------AGGUUCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 157532 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 92270 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 154454 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 151376 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 92120 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 148298 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 92001 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 145220 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 92180 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 48981 0.68 0.636448
Target:  5'- uGAGCGUCUGGGagaGCUgauucugcagaccggCUAGGAGCCgCa -3'
miRNA:   3'- uCUCGCGGAUCC---CGA---------------GGUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 170048 0.68 0.642424
Target:  5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3'
miRNA:   3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136803 0.68 0.642424
Target:  5'- cGGGGCGCgCUGGgucgcGGCUgccccCCGGGAcccccgGCCCCg -3'
miRNA:   3'- -UCUCGCG-GAUC-----CCGA-----GGUUCU------CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.