miRNA display CGI


Results 101 - 120 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 13410 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 25722 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 22644 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 130044 0.67 0.662311
Target:  5'- cGGAcCGCgaGccGGGcCUCCAAGAGCgCCCc -3'
miRNA:   3'- -UCUcGCGgaU--CCC-GAGGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 157770 0.67 0.662311
Target:  5'- --uGCucuCCUcguGGGC-CCGGGAGCCCCc -3'
miRNA:   3'- ucuCGc--GGAu--CCCGaGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28780 0.67 0.662311
Target:  5'- gGGAGCauacccugggGCCgAGGGCUCacuuGGGGCagCCCa -3'
miRNA:   3'- -UCUCG----------CGGaUCCCGAGgu--UCUCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 72564 0.67 0.662311
Target:  5'- uGGGCGCCggcguggugcUGGGGCUugCCGGGGuuagaaCCCCg -3'
miRNA:   3'- uCUCGCGG----------AUCCCGA--GGUUCUc-----GGGG- -5'
28803 3' -60.1 NC_006146.1 + 116810 0.67 0.662311
Target:  5'- gGGAGCaGgUUAGGG-UCCAAGAGCgCg -3'
miRNA:   3'- -UCUCG-CgGAUCCCgAGGUUCUCGgGg -5'
28803 3' -60.1 NC_006146.1 + 168344 0.67 0.662311
Target:  5'- cAGAGCcUCaguGGGCUgaagaaCCAGGuGCCCCg -3'
miRNA:   3'- -UCUCGcGGau-CCCGA------GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 124937 0.67 0.659333
Target:  5'- aGGAGCuGCCccGGGCagagagcgucgaggUCCccaGAGAGaCCCCg -3'
miRNA:   3'- -UCUCG-CGGauCCCG--------------AGG---UUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 107518 0.68 0.652375
Target:  5'- gGGGGCGuCCUcuGGUUUaaaCAuGAGCCCCa -3'
miRNA:   3'- -UCUCGC-GGAucCCGAG---GUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 65120 0.68 0.652375
Target:  5'- gGGAGC-CCUGGGugcccuugguGCUCUuGGAGCUCUu -3'
miRNA:   3'- -UCUCGcGGAUCC----------CGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 110009 0.68 0.652375
Target:  5'- -uGGgGCCUcAGGGCUCCGuccugaucaaAGAugGCCUCg -3'
miRNA:   3'- ucUCgCGGA-UCCCGAGGU----------UCU--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137406 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135548 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170668 0.68 0.652375
Target:  5'- -cGGCGCg-GGGGaggCCAGGGGCgCCCc -3'
miRNA:   3'- ucUCGCGgaUCCCga-GGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 136384 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136291 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 18855 0.68 0.652375
Target:  5'- cGGGCGCUgccGGGGUgguggacgUgCGGGGGCCUCa -3'
miRNA:   3'- uCUCGCGGa--UCCCG--------AgGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 123145 0.68 0.652375
Target:  5'- uGGAGgccguacuCGCC-AGGGCgcgCgAGGAGgCCCCg -3'
miRNA:   3'- -UCUC--------GCGGaUCCCGa--GgUUCUC-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.